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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:423.3 nTPM
HPA Brain:260.5 nTPM
GTEx:423.3 nTPM
FANTOM5:236.6 Scaled Tags Per Million
Pig:247.1 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

260.5
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 212.6
1981 Female, age 72, midline 308.5
2048 Male, age 55, midline 210.4
2816 Male, age 47, midline 198.2
2565 Male, age 75, midline 173.4
2194 Female, age 79, both hemispheres 172.5
Cervical spinal cord, dorsal horn
nTPM: 260.5
2296 Male, age 66, both hemispheres 459.5
2173 Female, age 72, unknown 362.7
2069 Male, age 47, both hemispheres 270.1
1877 Male, age 55, unknown 187.7
2297 Male, age 75, both hemispheres 150.6
2721 Male, age 90, both hemispheres 132.2
Cervical spinal cord, ventral horn
nTPM: 228.9
2098 Female, age 72, unknown 359.3
2068 Male, age 55, unknown 224.7
2809 Male, age 90, both hemispheres 217.9
2480 Male, age 75, both hemispheres 217.6
2295 Male, age 66, both hemispheres 180.2
2820 Female, age 79, both hemispheres 173.4

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

423.3
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 423.3
Samples: 159

Max nTPM: 750.2
Min nTPM: 146.9
Std nTPM: 136.6
Median nTPM: 417.2
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 750.2
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 720.7
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 710.1
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 704.0
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 702.9
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 696.4
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 689.8
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 668.3
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 668.3
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 663.5
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 660.0
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 654.6
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 649.7
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 643.7
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 642.7
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 631.8
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 628.2
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 619.8
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 609.0
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 605.0
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 602.3
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 600.7
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 594.0
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 586.5
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 584.3
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 570.1
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 566.6
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 561.2
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 554.2
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 551.6
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 550.8
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 550.8
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 532.3
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 530.7
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 518.6
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 518.3
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 515.8
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 512.1
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 508.9
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 504.6
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 503.1
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 503.0
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 502.5
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 501.3
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 498.4
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 497.3
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 497.0
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 496.9
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 488.2
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 481.4
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 476.8
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 472.5
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 469.2
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 465.9
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 462.2
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 459.1
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 458.2
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 457.9
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 457.2
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 453.6
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 449.5
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 447.6
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 446.6
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 438.0
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 437.0
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 434.9
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 434.6
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 433.6
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 433.6
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 431.9
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 431.4
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 430.3
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 427.9
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 425.9
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 424.9
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 421.7
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 419.3
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 418.6
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 417.3
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 417.2
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 413.8
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 412.7
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 412.2
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 408.2
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 406.2
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 401.0
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 399.9
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 398.9
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 396.2
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 391.7
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 391.4
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 389.0
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 388.5
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 387.8
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 385.5
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 379.9
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 379.2
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 378.5
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 377.6
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 376.7
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 375.2
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 373.3
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 370.7
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 365.7
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 363.3
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 358.4
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 357.1
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 352.7
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 350.7
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 349.2
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 345.0
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 343.8
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 342.0
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 338.2
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 337.8
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 337.7
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 334.7
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 332.8
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 328.5
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 324.6
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 323.7
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 321.6
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 319.4
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 314.8
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 311.0
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 303.7
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 303.1
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 299.9
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 297.0
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 295.6
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 293.4
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 289.7
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 281.0
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 272.7
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 268.9
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 266.0
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 265.9
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 264.2
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 263.9
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 260.1
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 258.1
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 255.1
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 249.1
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 245.2
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 243.5
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 237.9
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 237.8
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 236.4
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 231.3
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 208.3
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 208.2
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 207.5
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 196.8
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 195.2
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 187.8
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 186.9
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 179.7
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 165.1
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 146.9
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

236.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 236.6
FF:10181-103D1 60 years, female 271.6
FF:10159-103A6 76 years, female 201.6

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

247.1
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 214.9
Samples: 4

Max nTPM: 230.2
Min nTPM: 195.1
Sample A Female 213.3
Sample B Female 230.2
Sample C Male 221.1
Sample D Male 195.1
Ventral spinal cord
nTPM: 247.1
Samples: 4

Max nTPM: 265.4
Min nTPM: 224.2
Sample A Female 251.7
Sample B Female 265.4
Sample C Male 224.2
Sample D Male 247.2

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