We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
TMEM59
HPA
RESOURCES
  • TISSUE
  • BRAIN
  • SINGLE CELL
  • SUBCELLULAR
  • CANCER
  • BLOOD
  • CELL LINE
  • STRUCTURE & INTERACTION
ABOUT
  • INTRODUCTION
  • HISTORY
  • ORGANIZATION
  • PUBLICATIONS
  • ANTIBODY SUBMISSION
  • ANTIBODY AVAILABILITY
  • ACKNOWLEDGMENTS
  • CONTACT
NEWS
  • NEWS ARTICLES
  • PRESS ROOM
LEARN
  • DICTIONARY
  • PROTEIN CLASSES
  • PROTEIN EVIDENCE
  • METHODS
  • EDUCATIONAL VIDEOS
DATA
  • DOWNLOADABLE DATA
  • PUBLICATION DATA
  • RELEASE HISTORY
HELP
  • ANTIBODY VALIDATION
  • ASSAYS & ANNOTATION
  • DISCLAIMER
  • HELP & FAQ
  • PRIVACY STATEMENT
  • LICENCE & CITATION
Fields »
Search result

Field
Term
Gene name
Class
Subclass
Class
Keyword
Chromosome
External id
Tissue
Cell type
Expression
Antibody panel
Tissue
Main location
Patient ID
Annotation
Tissue
Category
Tau score
Cluster
Reliability
Brain region
Category
Tau score
Brain region
Category
Tau score
Brain region
Category
Tau score
Cluster
Reliability
Tissue
Cell type
Enrichment
Cell type
Category
Tau score
Cell type
Category
Tau score
Cell type
Category
Tau score
Cell lineage
Category
Tau score
Cluster
Cluster
Location
Searches
Location
Cell line
Class
Type
Phase
Reliability
Cancer
Prognosis
Cancer
Category
Cancer
Category
Tau score
Cluster
Variants
Interacting gene (ensg_id)
Type
Number of interactions
Pathway
Category
Score
Score
Score
Validation
Validation
Validation
Validation
Antibodies
Data type
Column


  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • SUBCELL

  • CANCER

  • BLOOD

  • CELL LINE

  • STRUCT & INT

  • TMEM59
TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Low
Neuronal cells: High
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
GTEx:144.3 nTPM
FANTOM5:151.9 Scaled Tags Per Million
Pig:118.9 nTPM

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA075447
Glial cells Low
Neuronal cells High



CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

144.3
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 144.3
Samples: 246

Max nTPM: 299.7
Min nTPM: 69.4
Std nTPM: 27.4
Median nTPM: 138.2
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 299.7
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 261.0
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 226.6
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 219.1
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 199.4
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 199.3
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 199.2
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 198.8
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 193.5
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 191.7
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 190.9
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 189.1
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 188.8
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 185.9
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 185.6
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 184.2
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 182.9
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 182.9
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 182.8
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 182.8
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 182.7
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 181.9
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 180.9
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 179.4
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 175.5
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 175.2
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 175.0
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 174.2
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 173.9
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 173.4
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 173.2
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 173.0
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 171.2
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 170.7
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 170.6
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 170.2
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 170.1
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 169.0
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 168.6
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 167.7
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 167.3
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 167.1
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 166.8
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 166.8
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 166.6
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 166.4
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 166.1
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 165.6
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 165.6
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 165.2
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 164.8
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 162.9
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 162.8
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 162.6
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 162.5
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 162.5
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 162.4
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 162.2
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 162.0
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 161.9
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 161.7
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 160.0
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 160.0
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 159.6
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 159.4
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 159.4
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 159.4
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 159.3
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 158.6
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 158.1
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 158.0
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 158.0
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 157.6
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 157.2
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 156.8
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 156.6
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 155.8
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 155.2
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 154.9
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 154.7
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 154.6
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 154.4
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 154.3
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 153.9
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 153.9
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 153.8
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 153.3
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 152.5
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 150.7
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 150.6
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 149.9
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 149.8
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 149.5
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 149.1
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 148.8
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 148.6
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 148.0
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 147.9
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 147.8
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 147.5
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 147.1
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 146.9
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 146.7
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 146.2
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 146.0
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 145.7
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 145.4
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 143.5
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 143.4
GTEX-OXRN-0011-R5A-SM-2I5EF 50-59 years, male 142.8
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 142.7
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 142.6
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 142.3
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 142.1
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 142.1
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 142.0
GTEX-R55E-0011-R5A-SM-2TC5N 20-29 years, male 141.4
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 140.0
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 139.2
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 138.8
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 138.6
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 138.4
GTEX-RU72-0011-R5A-SM-2TF6U 50-59 years, female 138.2
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 138.2
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 137.9
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 137.8
GTEX-TSE9-0011-R5A-SM-3DB7J 60-69 years, female 137.4
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 137.3
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 137.1
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 137.1
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 137.0
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 137.0
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 136.8
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 136.1
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 136.1
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 135.5
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 135.5
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 135.5
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 135.4
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 135.3
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 135.1
GTEX-RVPV-0011-R5A-SM-2TF69 60-69 years, male 134.9
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 134.6
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 134.6
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 134.5
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 134.3
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 134.0
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 133.8
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 133.7
GTEX-12WSH-0011-R5b-SM-5P9F3 50-59 years, male 133.1
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 133.1
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 133.0
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 132.7
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 132.3
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 132.1
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 131.5
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 131.5
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 131.3
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 131.1
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 130.7
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 130.7
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 130.5
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 130.4
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 130.3
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 130.2
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 129.8
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 129.8
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 129.4
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 129.2
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 129.1
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 128.9
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 128.8
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 128.6
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 128.0
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 128.0
GTEX-P44H-0011-R5A-SM-2XCEX 40-49 years, male 127.7
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 127.6
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 127.5
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 127.4
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 127.4
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 127.2
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 127.2
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 126.9
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 126.8
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 126.8
GTEX-P44G-0011-R5A-SM-2I3FA 30-39 years, male 126.7
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 126.6
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 126.1
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 125.8
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 125.7
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 125.7
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 125.4
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 125.3
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 125.2
GTEX-N7MT-0011-R5a-SM-2I3G6 60-69 years, female 125.1
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 124.4
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 124.3
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 124.0
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 124.0
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 123.8
GTEX-18464-0011-R5b-SM-718A6 50-59 years, male 123.2
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 123.0
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 122.5
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 122.5
GTEX-UTHO-0011-R5A-SM-3GIJD 60-69 years, male 122.4
GTEX-S7SE-0011-R5A-SM-2XCDA 50-59 years, male 122.3
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 122.2
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 121.6
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 121.1
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 121.0
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 120.8
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 120.5
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 120.3
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 119.3
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 119.2
GTEX-OXRO-0011-R5A-SM-2I5EG 60-69 years, female 119.2
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 118.9
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 118.9
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 118.1
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 117.8
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 117.5
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 117.1
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 116.5
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 116.3
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 115.5
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 114.7
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 113.9
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 113.4
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 113.2
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 111.4
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 111.3
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 108.4
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 108.3
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 106.6
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 106.6
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 105.2
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 104.7
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 104.6
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 103.8
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 103.4
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 97.3
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 96.5
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 94.2
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 88.3
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 77.0
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 69.4
Show allShow less

CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

151.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 151.9
FF:10164-103B2 76 years, female 151.9

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

118.9
Pig sample Sample description nTPM
Caudate
nTPM: 119.0
Samples: 4

Max nTPM: 128.7
Min nTPM: 103.9
Sample A Female 128.7
Sample B Female 123.1
Sample C Male 120.1
Sample D Male 103.9

Contact

  • NEWS ARTICLES
  • PRESS ROOM

The Project

  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS

The Human Protein Atlas

  • DOWNLOADABLE DATA
  • LICENCE & CITATION
  • HELP & FAQ
The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.


contact@proteinatlas.org