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TISSUE PRIMARY DATA VAGINA Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Vagina
Tissue proteome
Vagina
VAGINA - Expression summary
Protein expression
Vaginai

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Squamous epithelial cells: Medium
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:196.2 nTPM
GTEx:196.2 nTPM
FANTOM5:236.2 Scaled Tags Per Million

VAGINA - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA075447
Squamous epithelial cells Medium



VAGINA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

196.2
GTEx sample id Sample description nTPM
Vagina
Average nTPM: 196.2
Samples: 156

Max nTPM: 375.0
Min nTPM: 86.9
Std nTPM: 51.7
Median nTPM: 190.1
GTEX-1IDJU-1026-SM-AHZ2U 60-69 years, female 375.0
GTEX-ZLWG-1126-SM-4WWFQ 50-59 years, female 347.0
GTEX-14AS3-1726-SM-5RQJV 40-49 years, female 319.2
GTEX-ZZPU-2226-SM-5EGIV 50-59 years, female 316.7
GTEX-11I78-2026-SM-5987C 50-59 years, female 315.4
GTEX-N7MT-1926-SM-3LK5N 60-69 years, female 307.2
GTEX-S7SF-1426-SM-4AT5A 20-29 years, female 295.4
GTEX-14PN3-1626-SM-6AJAV 60-69 years, female 286.9
GTEX-ZXES-0626-SM-5E45P 30-39 years, female 286.4
GTEX-13D11-1326-SM-5IJFY 50-59 years, female 282.6
GTEX-T6MO-1226-SM-4DM5S 40-49 years, female 279.5
GTEX-1AMFI-1526-SM-73KVY 50-59 years, female 276.1
GTEX-1JN76-1526-SM-CNPPF 20-29 years, female 274.5
GTEX-SE5C-1126-SM-4BRWZ 40-49 years, female 268.2
GTEX-11XUK-1326-SM-5EQM4 40-49 years, female 263.8
GTEX-Y3IK-2226-SM-4YCD4 50-59 years, female 261.5
GTEX-15SB6-1426-SM-7KUEM 50-59 years, female 259.3
GTEX-17F9Y-2326-SM-7DUFP 70-79 years, female 257.3
GTEX-ZVT2-0626-SM-5GICR 50-59 years, female 255.7
GTEX-1MCYP-1326-SM-EV7AD 20-29 years, female 255.4
GTEX-14BMU-1926-SM-5S2QC 20-29 years, female 254.5
GTEX-1LGOU-1126-SM-D3LAI 20-29 years, female 251.4
GTEX-Q734-1426-SM-DTXFX 40-49 years, female 246.3
GTEX-S341-1226-SM-4AD5S 40-49 years, female 245.7
GTEX-13PL7-2726-SM-5L3GB 60-69 years, female 240.3
GTEX-15SDE-1726-SM-6LPJS 50-59 years, female 240.1
GTEX-1399S-2326-SM-5K7YV 30-39 years, female 239.7
GTEX-PWN1-2526-SM-48TDS 40-49 years, female 237.0
GTEX-1R9JW-1426-SM-DTX9K 30-39 years, female 236.9
GTEX-14PKU-1326-SM-6871B 40-49 years, female 236.6
GTEX-1QCLZ-2226-SM-DTX7R 60-69 years, female 234.6
GTEX-14H4A-2426-SM-664OQ 40-49 years, female 234.5
GTEX-131XG-2126-SM-5DUXG 50-59 years, female 234.2
GTEX-11VI4-0726-SM-5GU5B 40-49 years, female 233.8
GTEX-ZC5H-2226-SM-4WAWS 40-49 years, female 232.6
GTEX-16NGA-1626-SM-72D6M 40-49 years, female 231.2
GTEX-TML8-1126-SM-4DXSS 40-49 years, female 230.5
GTEX-QVJO-2526-SM-CYPRA 60-69 years, female 229.7
GTEX-1GN1W-1526-SM-7P8TG 50-59 years, female 229.2
GTEX-147F3-1526-SM-5SIAK 50-59 years, female 227.6
GTEX-QCQG-1226-SM-48U23 50-59 years, female 227.2
GTEX-TSE9-2526-SM-4DXUS 60-69 years, female 224.9
GTEX-1IE54-2626-SM-CMKFY 40-49 years, female 224.8
GTEX-OHPK-2526-SM-3MJH9 50-59 years, female 223.8
GTEX-WYVS-1426-SM-4ONCV 40-49 years, female 222.4
GTEX-RWS6-1726-SM-47JXP 60-69 years, female 220.1
GTEX-ZTPG-2226-SM-57WF9 20-29 years, female 219.6
GTEX-S4P3-1126-SM-4AD52 50-59 years, female 215.2
GTEX-14PJ6-1626-SM-6872D 60-69 years, female 214.5
GTEX-1HCUA-1026-SM-A9SMI 50-59 years, female 213.7
GTEX-PWCY-1726-SM-48TD3 20-29 years, female 213.0
GTEX-11DXX-1726-SM-5H11T 60-69 years, female 212.3
GTEX-1F5PL-1826-SM-7P8PP 40-49 years, female 212.1
GTEX-13PVR-1426-SM-5S2PW 60-69 years, female 211.4
GTEX-U3ZN-0926-SM-4DXTU 30-39 years, female 211.2
GTEX-ZYVF-0326-SM-5GIES 50-59 years, female 211.2
GTEX-146FR-2426-SM-5NQAU 60-69 years, female 209.9
GTEX-1LVAM-1926-SM-E6CIM 50-59 years, female 209.4
GTEX-1LVAN-1626-SM-CNPQ7 50-59 years, female 208.9
GTEX-1LGRB-2126-SM-COH48 50-59 years, female 208.2
GTEX-PLZ4-2726-SM-3P61A 50-59 years, female 207.5
GTEX-1LH75-1726-SM-DHXKZ 50-59 years, female 207.3
GTEX-145ME-1426-SM-5RQJS 40-49 years, female 207.1
GTEX-146FH-2626-SM-5Q5E1 50-59 years, female 207.1
GTEX-TMMY-1926-SM-4DXUU 40-49 years, female 205.6
GTEX-13W3W-2326-SM-5LU4Y 60-69 years, female 205.4
GTEX-WEY5-0826-SM-4LMIH 40-49 years, female 205.2
GTEX-ZGAY-2226-SM-4YCCX 40-49 years, female 205.1
GTEX-ZQG8-1126-SM-51MRL 60-69 years, female 204.3
GTEX-1399U-1526-SM-5J2N7 50-59 years, female 201.4
GTEX-UJHI-1326-SM-4IHJO 50-59 years, female 199.2
GTEX-ZP4G-0826-SM-4WWF3 20-29 years, female 198.9
GTEX-1QP28-1426-SM-EVR4E 50-59 years, female 197.4
GTEX-XUZC-1226-SM-4BRVJ 30-39 years, female 197.4
GTEX-S4UY-1326-SM-4AD4X 40-49 years, female 196.2
GTEX-ZE7O-2426-SM-57WD7 50-59 years, female 190.8
GTEX-P4PP-2526-SM-3P61P 30-39 years, female 190.7
GTEX-1HCU8-2026-SM-9YFLE 60-69 years, female 190.3
GTEX-13QBU-1726-SM-5IJFQ 40-49 years, female 189.8
GTEX-11GSP-2226-SM-5HL5Q 60-69 years, female 189.7
GTEX-1MCC2-1126-SM-EVYD6 30-39 years, female 189.1
GTEX-11EM3-1826-SM-5A5KO 20-29 years, female 189.0
GTEX-W5WG-1026-SM-4LMIF 50-59 years, female 188.5
GTEX-1CAMS-2326-SM-793CR 40-49 years, female 188.2
GTEX-13U4I-2026-SM-5LU3L 40-49 years, female 185.7
GTEX-P78B-2226-SM-3P5ZZ 40-49 years, female 185.5
GTEX-XUW1-0326-SM-4BOOR 50-59 years, female 184.3
GTEX-1PIEJ-1926-SM-EVYB7 20-29 years, female 184.2
GTEX-1ICG6-1626-SM-ARL81 70-79 years, female 183.7
GTEX-12ZZX-1926-SM-5EGKC 40-49 years, female 183.4
GTEX-1C475-0526-SM-793AC 40-49 years, female 182.6
GTEX-RU1J-1426-SM-46MUV 20-29 years, female 181.0
GTEX-18D9A-1026-SM-7KFRU 30-39 years, female 180.8
GTEX-1GN1U-2426-SM-9KNTU 50-59 years, female 178.1
GTEX-1F48J-2526-SM-7P8TU 50-59 years, female 177.2
GTEX-X15G-1926-SM-4PQZQ 50-59 years, female 175.7
GTEX-12WSD-2926-SM-5LZUH 60-69 years, female 173.9
GTEX-13OVI-0926-SM-5J1MI 60-69 years, female 173.9
GTEX-1GMR8-2526-SM-7RHI9 50-59 years, female 173.5
GTEX-1I1GT-1226-SM-B2LVK 60-69 years, female 173.3
GTEX-Y114-1926-SM-4TT8J 50-59 years, female 173.2
GTEX-OHPL-2526-SM-3MJGT 60-69 years, female 173.0
GTEX-PX3G-2526-SM-48TZV 20-29 years, female 172.8
GTEX-1QPFJ-1626-SM-DTX7X 30-39 years, female 172.8
GTEX-1S5ZU-2626-SM-E9TII 20-29 years, female 172.8
GTEX-11P81-2126-SM-5HL6N 30-39 years, female 172.6
GTEX-1GF9U-1926-SM-7P8TZ 40-49 years, female 172.6
GTEX-15DYW-2926-SM-6PANA 60-69 years, female 172.5
GTEX-ZAK1-2426-SM-EXOHM 50-59 years, female 172.3
GTEX-ZYY3-2626-SM-5N9DH 60-69 years, female 170.5
GTEX-1I4MK-1726-SM-ARL7O 50-59 years, female 170.0
GTEX-XV7Q-1626-SM-4BRWC 40-49 years, female 169.0
GTEX-18A7A-2826-SM-7LT8J 50-59 years, female 167.3
GTEX-12WSJ-1326-SM-5GCOB 40-49 years, female 167.0
GTEX-ZV6S-1326-SM-59HJA 40-49 years, female 165.7
GTEX-1HBPH-2926-SM-9WPNX 40-49 years, female 165.3
GTEX-14PJM-2926-SM-69LOE 50-59 years, female 164.2
GTEX-14DAQ-2326-SM-5S2QX 60-69 years, female 161.6
GTEX-15ER7-2526-SM-7KUFW 20-29 years, female 161.6
GTEX-14JG6-0726-SM-69LQH 30-39 years, female 160.2
GTEX-Y8LW-1426-SM-5RQJJ 50-59 years, female 159.9
GTEX-X8HC-2826-SM-46MWJ 50-59 years, female 158.7
GTEX-15UF6-2126-SM-6M46Z 70-79 years, female 157.4
GTEX-1HBPM-2726-SM-9WYUA 60-69 years, female 154.4
GTEX-131YS-2426-SM-5J2OD 60-69 years, female 152.0
GTEX-YFC4-2926-SM-5IFJ8 40-49 years, female 151.8
GTEX-1HCU6-2326-SM-ACKXP 60-69 years, female 151.6
GTEX-1NUQO-1826-SM-E6CQU 20-29 years, female 151.0
GTEX-145LS-2526-SM-5TDC9 60-69 years, female 147.9
GTEX-YJ8O-1226-SM-5P9JE 40-49 years, female 147.3
GTEX-113JC-1926-SM-5N9GE 50-59 years, female 146.0
GTEX-16NPV-2526-SM-6M483 50-59 years, female 145.9
GTEX-NPJ7-2526-SM-EV79A 60-69 years, female 145.9
GTEX-OHPN-2426-SM-E9TI5 60-69 years, female 143.8
GTEX-14A5I-2726-SM-5SIB3 50-59 years, female 143.0
GTEX-13N11-1526-SM-5L3FL 50-59 years, female 142.1
GTEX-QDT8-2526-SM-48TYX 30-39 years, female 136.0
GTEX-WRHU-2926-SM-4MVNQ 50-59 years, female 135.3
GTEX-11EMC-1926-SM-5A5JU 60-69 years, female 134.1
GTEX-15SHU-2926-SM-7KUKT 40-49 years, female 133.4
GTEX-1EWIQ-2326-SM-7IGNF 70-79 years, female 132.4
GTEX-T2IS-1926-SM-4DM74 20-29 years, female 131.5
GTEX-13QIC-1826-SM-5J1MY 60-69 years, female 123.2
GTEX-ZVT3-2726-SM-5GU5X 60-69 years, female 121.2
GTEX-1LNCM-1026-SM-E9U5D 50-59 years, female 121.1
GTEX-1JN1M-2326-SM-ARZNG 60-69 years, female 120.7
GTEX-1117F-2526-SM-5GZY6 60-69 years, female 119.2
GTEX-17JCI-2526-SM-7DHLB 60-69 years, female 117.7
GTEX-1J1OQ-1826-SM-CL53R 40-49 years, female 117.3
GTEX-SN8G-2626-SM-EXUQT 50-59 years, female 113.3
GTEX-183WM-2126-SM-7LG4I 70-79 years, female 112.8
GTEX-1J8EW-2526-SM-CKZO2 60-69 years, female 111.7
GTEX-1HFI7-1126-SM-A96S5 50-59 years, female 105.2
GTEX-1JMQL-2326-SM-CNNPV 50-59 years, female 95.5
GTEX-11TTK-2726-SM-5GU58 60-69 years, female 93.1
GTEX-1A8FM-2426-SM-7IGPE 50-59 years, female 86.9
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VAGINA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

236.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Vagina
Scaled Tags Per Million: 236.2
FF:10204-103F6 68 years, female 236.2

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