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TISSUE PRIMARY DATA SMALL INTESTINE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Small intestine
Tissue proteome
Intestine
SMALL INTESTINE - Expression summary
Protein expression
Small intestinei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glandular cells: High
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:358.7 nTPM
HPA:358.7 nTPM
GTEx:224.8 nTPM
FANTOM5:316.9 Scaled Tags Per Million

SMALL INTESTINE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA075447
Glandular cells High



SMALL INTESTINE - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Average nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

358.7
overview
Male, age 65
Small intestine sample 232
nTPM: 365.4
Cell types%
Glandular cells:
55

Smooth muscle cells:
5

Other cell types:
40

overview
Male, age 39
Small intestine sample 233
nTPM: 419.1
Cell types%
Glandular cells:
40

Smooth muscle cells:
5

Other cell types:
55

overview
Male, age 68
Small intestine sample 234
nTPM: 318.9
Cell types%
Glandular cells:
30

Smooth muscle cells:
15

Other cell types:
55

N/A
Male, age 85
Small intestine sample 235
nTPM: 331.3

SMALL INTESTINE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

224.8
GTEx sample id Sample description nTPM
Small Intestine - Terminal Ileum
Average nTPM: 224.8
Samples: 187

Max nTPM: 717.8
Min nTPM: 80.4
Std nTPM: 110.2
Median nTPM: 189.0
GTEX-111YS-1426-SM-5GID8 60-69 years, male 717.8
GTEX-1J8Q3-2526-SM-CNNQ4 60-69 years, male 536.6
GTEX-YEC4-1726-SM-4W21E 40-49 years, male 519.1
GTEX-14PJ6-1726-SM-6AJBN 60-69 years, female 500.4
GTEX-ZPCL-1726-SM-57WEO 60-69 years, female 496.0
GTEX-13D11-0726-SM-5LZZB 50-59 years, female 477.1
GTEX-14DAR-1426-SM-5RQIR 50-59 years, male 469.6
GTEX-1GMR2-1026-SM-7MKHJ 50-59 years, male 466.2
GTEX-WY7C-1826-SM-4ONCE 50-59 years, male 458.7
GTEX-YFCO-1326-SM-664NV 40-49 years, male 452.0
GTEX-13PL7-2626-SM-5IFH4 60-69 years, female 446.2
GTEX-14PN3-2026-SM-68729 60-69 years, female 438.1
GTEX-ZTX8-0526-SM-59HLD 20-29 years, male 432.0
GTEX-Y9LG-1626-SM-5IFHM 30-39 years, male 430.0
GTEX-ZTSS-0926-SM-59865 40-49 years, male 420.5
GTEX-YB5E-1526-SM-5IFIE 40-49 years, male 417.5
GTEX-1AMFI-1926-SM-731F2 50-59 years, female 410.7
GTEX-16MTA-1526-SM-6LPJB 50-59 years, male 404.1
GTEX-ZXES-1526-SM-5NQ95 30-39 years, female 389.9
GTEX-1B8KE-1726-SM-7IGMN 50-59 years, male 386.5
GTEX-ZVZP-1826-SM-5GZXB 50-59 years, male 382.3
GTEX-15G1A-1726-SM-6LPI4 30-39 years, male 381.7
GTEX-1122O-1326-SM-5H11F 60-69 years, female 381.2
GTEX-ZLV1-1126-SM-4WWBW 60-69 years, female 373.3
GTEX-YF7O-1826-SM-5IFIU 50-59 years, male 371.1
GTEX-14PJN-0826-SM-686ZL 30-39 years, male 368.4
GTEX-ZDTT-1726-SM-5HL69 60-69 years, male 361.2
GTEX-ZYFG-2026-SM-5E43Y 60-69 years, female 356.3
GTEX-ZF29-1626-SM-4WKFJ 60-69 years, female 350.3
GTEX-ZLWG-1626-SM-DNZZ1 50-59 years, female 343.3
GTEX-11P7K-1626-SM-5GU63 30-39 years, male 338.7
GTEX-1QP2A-2426-SM-EXOJA 50-59 years, male 334.7
GTEX-XBED-1426-SM-4AT4G 60-69 years, male 326.8
GTEX-145LT-1026-SM-5LU9O 40-49 years, male 323.4
GTEX-1399S-2026-SM-5KM4B 30-39 years, female 322.7
GTEX-ZA64-1226-SM-5HL7B 20-29 years, male 320.0
GTEX-1R7EU-1326-SM-E6CQ6 60-69 years, male 309.2
GTEX-XXEK-1026-SM-4BRUW 50-59 years, male 306.1
GTEX-X5EB-1626-SM-4E3IV 40-49 years, male 305.0
GTEX-ZG7Y-1926-SM-DNZZ5 50-59 years, male 302.8
GTEX-VJYA-0926-SM-4KL1N 60-69 years, male 299.8
GTEX-11EQ9-1326-SM-5985X 30-39 years, male 298.2
GTEX-13FTW-2026-SM-5IJE2 40-49 years, male 298.0
GTEX-139YR-2226-SM-5IFFW 50-59 years, male 292.2
GTEX-11I78-1126-SM-5A5K5 50-59 years, female 289.9
GTEX-131XF-1326-SM-5GCMQ 60-69 years, male 288.1
GTEX-14XAO-1926-SM-6ETZO 60-69 years, female 286.8
GTEX-11DXX-1626-SM-5H11H 60-69 years, female 277.8
GTEX-ZZ64-0526-SM-5GZXM 20-29 years, male 277.8
GTEX-13113-1226-SM-5EGHT 60-69 years, female 274.1
GTEX-XUZC-1426-SM-4BRV3 30-39 years, female 271.0
GTEX-14PK6-1626-SM-6871I 70-79 years, female 264.9
GTEX-14E6E-1626-SM-5RQI7 30-39 years, male 263.1
GTEX-144GM-1026-SM-79OKU 20-29 years, male 257.9
GTEX-ZTPG-2626-SM-57WFX 20-29 years, female 254.3
GTEX-WHSB-1026-SM-4M1XN 50-59 years, male 253.9
GTEX-139T6-1026-SM-5IJGC 50-59 years, male 250.9
GTEX-1L5NE-1826-SM-EV79T 50-59 years, male 248.9
GTEX-11DXZ-1326-SM-5H11X 50-59 years, male 248.2
GTEX-1NSGN-2126-SM-DPRYN 50-59 years, male 246.9
GTEX-ZLFU-1526-SM-4WWBT 40-49 years, male 246.0
GTEX-ZPIC-2326-SM-57WDW 40-49 years, female 233.7
GTEX-1CAMR-0826-SM-7MKFK 20-29 years, male 231.3
GTEX-1KXAM-2026-SM-DHXKI 60-69 years, male 230.2
GTEX-WFG7-1726-SM-4LVME 20-29 years, male 228.3
GTEX-14PKU-1626-SM-6871C 40-49 years, female 226.0
GTEX-13X6H-1826-SM-7EWCZ 50-59 years, female 223.5
GTEX-1C475-1426-SM-793CH 40-49 years, female 222.2
GTEX-16AAH-1426-SM-7KFTR 50-59 years, male 220.7
GTEX-1S82Z-1826-SM-E9TIK 30-39 years, female 218.3
GTEX-1R9K4-2326-SM-E6CRB 60-69 years, male 215.2
GTEX-ZVT2-2126-SM-5NQ93 50-59 years, female 213.6
GTEX-1R9JW-1926-SM-EVR4J 30-39 years, female 211.9
GTEX-ZAB5-1526-SM-5HL9P 50-59 years, male 210.1
GTEX-13RTK-0826-SM-5Q5C6 20-29 years, male 209.4
GTEX-1R9K5-2026-SM-E6CPS 50-59 years, male 209.2
GTEX-Y3IK-1726-SM-4YCCR 50-59 years, female 208.5
GTEX-111CU-1326-SM-5NQ8L 50-59 years, male 204.8
GTEX-Y114-1426-SM-4TT6W 50-59 years, female 202.3
GTEX-13W3W-2026-SM-5K7UL 60-69 years, female 202.0
GTEX-14PJ3-1326-SM-664O7 50-59 years, male 201.5
GTEX-15EU6-1826-SM-7PC1W 50-59 years, male 200.8
GTEX-1QW4Y-1226-SM-EWRMY 30-39 years, male 199.3
GTEX-1R7EV-1226-SM-DTX82 40-49 years, male 198.9
GTEX-1QCLZ-2126-SM-EWRNC 60-69 years, female 198.5
GTEX-XGQ4-1326-SM-4GIDU 50-59 years, male 198.2
GTEX-Y5LM-1626-SM-4VDTB 40-49 years, female 195.4
GTEX-16NGA-1126-SM-7KFSY 40-49 years, female 194.6
GTEX-1192X-2526-SM-59868 50-59 years, male 194.5
GTEX-WFJO-0926-SM-4LVM2 30-39 years, male 193.0
GTEX-13O21-1026-SM-5IJDU 50-59 years, male 192.7
GTEX-1J8QM-1026-SM-C1YQA 60-69 years, female 191.5
GTEX-1JN76-1126-SM-C1YRL 20-29 years, female 190.5
GTEX-12WSK-1526-SM-5CVNO 40-49 years, female 189.0
GTEX-13CF3-1226-SM-5LZXN 60-69 years, female 185.2
GTEX-11P82-0826-SM-5P9GU 20-29 years, male 184.6
GTEX-1C64O-2526-SM-79ONO 60-69 years, male 184.4
GTEX-1I1GT-1826-SM-ARZLW 60-69 years, female 184.1
GTEX-ZVP2-1726-SM-5GU5P 50-59 years, male 183.9
GTEX-1OKEX-1126-SM-DTXEB 60-69 years, male 182.3
GTEX-117YX-0326-SM-5GICL 50-59 years, male 181.6
GTEX-ZQUD-0926-SM-57WE3 30-39 years, male 181.4
GTEX-11XUK-1426-SM-5EQMG 40-49 years, female 180.5
GTEX-133LE-1426-SM-5IFH1 20-29 years, female 180.4
GTEX-1399R-2026-SM-5K7WN 30-39 years, male 178.8
GTEX-1B8KZ-1126-SM-7IGLX 50-59 years, male 175.4
GTEX-13O61-1326-SM-5KM31 60-69 years, male 173.3
GTEX-1MGNQ-2326-SM-EV7BG 40-49 years, male 172.8
GTEX-ZF2S-1726-SM-57WFT 50-59 years, female 172.7
GTEX-12BJ1-1926-SM-5HL9Z 60-69 years, male 171.9
GTEX-1RAZA-1826-SM-DTXA2 20-29 years, male 171.9
GTEX-ZQG8-2526-SM-57WEQ 60-69 years, female 170.5
GTEX-1QPFJ-2626-SM-DPRZU 30-39 years, female 169.1
GTEX-131XE-0926-SM-5HL7J 50-59 years, male 168.0
GTEX-145ME-0926-SM-5O9AR 40-49 years, female 168.0
GTEX-1MUQO-2426-SM-EAZ5A 60-69 years, male 167.7
GTEX-WH7G-1626-SM-4LVMY 40-49 years, male 164.9
GTEX-13FH7-1226-SM-5IJFK 50-59 years, female 164.8
GTEX-XAJ8-0526-SM-47JYK 40-49 years, male 164.4
GTEX-1JMQK-2426-SM-CXZJU 60-69 years, male 164.2
GTEX-WYJK-1526-SM-4ONCW 50-59 years, male 163.3
GTEX-WFON-1526-SM-4LVMP 40-49 years, male 162.5
GTEX-XMK1-1826-SM-4B66F 40-49 years, male 162.1
GTEX-11NSD-1726-SM-5N9C3 20-29 years, male 161.8
GTEX-11LCK-1926-SM-5A5KE 30-39 years, male 161.0
GTEX-17KNJ-1626-SM-718AL 50-59 years, male 159.5
GTEX-1QP28-1726-SM-E6CRK 50-59 years, female 157.6
GTEX-ZP4G-1626-SM-57WGD 20-29 years, female 157.2
GTEX-1HSMQ-2226-SM-C1YRD 50-59 years, male 156.2
GTEX-ZEX8-1826-SM-57WBH 50-59 years, male 156.0
GTEX-Z9EW-0926-SM-5CVMM 40-49 years, male 154.3
GTEX-13NYB-1826-SM-5J1N3 40-49 years, male 150.3
GTEX-13OVI-1926-SM-5IJCG 60-69 years, female 150.1
GTEX-Y5V5-1826-SM-4VDS5 60-69 years, female 148.9
GTEX-14PKV-2026-SM-6AJ9A 20-29 years, female 148.8
GTEX-1497J-1926-SM-5TDCC 60-69 years, male 148.2
GTEX-1RAZR-1826-SM-E6CRE 40-49 years, male 147.4
GTEX-WQUQ-2426-SM-4MVNW 60-69 years, male 145.4
GTEX-1K9T9-2726-SM-D4P3E 50-59 years, female 145.4
GTEX-1JK1U-1226-SM-CNNPN 60-69 years, male 145.2
GTEX-WRHK-1026-SM-4MVOD 20-29 years, female 144.6
GTEX-1399U-2126-SM-5IFEZ 50-59 years, female 143.9
GTEX-WFG8-1626-SM-4LVMB 20-29 years, male 143.7
GTEX-VUSG-1726-SM-4KKZL 50-59 years, male 141.8
GTEX-17MFQ-1026-SM-7KFSZ 20-29 years, male 141.2
GTEX-1LH75-1926-SM-DIPGD 50-59 years, female 138.4
GTEX-1PDJ9-1826-SM-E9U66 20-29 years, male 137.9
GTEX-1PIEJ-1526-SM-E6CP8 20-29 years, female 137.7
GTEX-14BMU-1426-SM-5TDE5 20-29 years, female 136.7
GTEX-XPVG-1726-SM-4B65W 50-59 years, male 136.0
GTEX-1H11D-2526-SM-9JGGU 40-49 years, male 135.2
GTEX-1R9PM-1626-SM-DPRY9 20-29 years, male 134.5
GTEX-1CAMS-2426-SM-7DHMV 40-49 years, female 133.7
GTEX-1IKOE-1926-SM-ARU7V 30-39 years, female 133.6
GTEX-1LGOU-1426-SM-D3L8N 20-29 years, female 131.9
GTEX-WEY5-1526-SM-4LMJF 40-49 years, female 131.7
GTEX-131XG-1726-SM-5LZUR 50-59 years, female 130.4
GTEX-1OJC3-1626-SM-E9U65 20-29 years, male 129.3
GTEX-X15G-1426-SM-4PQZK 50-59 years, female 129.2
GTEX-1BAJH-2526-SM-7IGOT 70-79 years, male 129.0
GTEX-1GL5R-2026-SM-7MKHP 50-59 years, male 127.6
GTEX-13QBU-1926-SM-5IJEW 40-49 years, female 126.9
GTEX-11VI4-1626-SM-5EQKO 40-49 years, female 126.1
GTEX-13111-1426-SM-5DUW3 50-59 years, male 125.5
GTEX-18A66-2526-SM-7KFTZ 60-69 years, male 125.3
GTEX-17HHE-1726-SM-79OKT 50-59 years, male 124.4
GTEX-16A39-1426-SM-6LLI6 30-39 years, female 124.2
GTEX-18QFQ-1626-SM-72D7H 30-39 years, male 124.1
GTEX-Y111-2226-SM-4SOJB 50-59 years, male 122.9
GTEX-1GMR3-2726-SM-7MKFB 40-49 years, male 120.9
GTEX-1LBAC-1526-SM-CXZKU 20-29 years, male 120.8
GTEX-14C39-1826-SM-5ZZW4 40-49 years, male 118.6
GTEX-1H1DE-1426-SM-9JGHV 20-29 years, male 117.0
GTEX-Y3I4-1326-SM-4TT8Z 50-59 years, male 116.6
GTEX-15DZA-0826-SM-6AJBF 30-39 years, female 114.4
GTEX-1F75I-2526-SM-9WPOZ 40-49 years, male 108.0
GTEX-183FY-1626-SM-793D8 20-29 years, male 107.0
GTEX-1AX8Z-2526-SM-731E3 60-69 years, male 107.0
GTEX-1EMGI-2826-SM-7IGMR 60-69 years, male 104.9
GTEX-ZC5H-2326-SM-4WAYT 40-49 years, female 104.8
GTEX-148VJ-2226-SM-5NQ9M 70-79 years, male 102.7
GTEX-1S5ZA-1326-SM-EV7BB 20-29 years, male 102.3
GTEX-1RAZQ-2226-SM-DPRZR 30-39 years, male 96.6
GTEX-1JJE9-2226-SM-CXZJM 70-79 years, male 95.0
GTEX-1CB4F-1826-SM-7MGXI 60-69 years, male 90.7
GTEX-UPK5-2026-SM-4JBIM 40-49 years, male 87.3
GTEX-11TUW-1926-SM-5BC58 60-69 years, male 80.4
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SMALL INTESTINE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

316.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Small intestine
Scaled Tags Per Million: 316.9
FF:10024-101D6 15,40,85 years, mixed 316.9

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