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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:390.3 nTPM
HPA Brain:150.7 nTPM
GTEx:390.3 nTPM
FANTOM5:84.7 Scaled Tags Per Million
Pig:156.1 nTPM
Mouse:233.5 nTPM
Allen mouse:12.4 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

150.7
Sample id Sample description nTPM
Amygdala
nTPM: 150.7
1987 Female, age 91, left hemisphere 166.2
2514 Male, age 75, right hemisphere 161.5
2814 Male, age 76, right hemisphere 158.1
2695 Female, age 67, right hemisphere 136.7
2517 Female, age 94, left hemisphere 130.8
Basal amygdala
nTPM: 122.7
2609 Male, age 75, right hemisphere 151.3
2110 Male, age 80, left hemisphere 140.6
2243 Female, age 91, right hemisphere 133.2
1955 Male, age 76, both hemispheres 124.4
2685 Female, age 94, left hemisphere 108.5
2827 Female, age 67, right hemisphere 78.4
Central amygdala
nTPM: 134.8
1905 Male, age 76, both hemispheres 147.3
2515 Male, age 75, right hemisphere 143.9
2239 Male, age 80, left hemisphere 128.3
2701 Female, age 91, right hemisphere 128.3
2826 Female, age 94, left hemisphere 126.0
Corticomedial amygdala
nTPM: 132.2
2428 Male, age 75, right hemisphere 157.1
2829 Male, age 80, left hemisphere 156.2
2242 Female, age 91, right hemisphere 139.7
2429 Female, age 94, left hemisphere 134.5
2240 Male, age 76, both hemispheres 122.8
2535 Female, age 67, right hemisphere 82.8
Lateral amygdala
nTPM: 115.9
2516 Male, age 75, right hemisphere 149.6
1883 Male, age 76, both hemispheres 148.2
2255 Female, age 91, right hemisphere 112.5
2534 Female, age 94, left hemisphere 106.4
2256 Male, age 80, left hemisphere 101.9
2830 Female, age 67, right hemisphere 77.1

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

390.3
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 390.3
Samples: 152

Max nTPM: 1076.3
Min nTPM: 155.8
Std nTPM: 132.1
Median nTPM: 361.6
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 1076.3
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 963.9
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 900.4
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 879.9
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 712.0
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 710.7
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 666.1
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 662.2
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 635.8
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 580.4
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 556.3
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 552.2
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 537.0
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 529.8
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 527.2
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 519.6
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 507.3
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 501.6
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 476.5
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 472.7
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 472.5
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 468.5
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 467.1
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 466.4
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 461.2
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 460.5
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 460.1
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 457.3
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 456.7
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 456.5
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 449.4
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 448.7
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 441.1
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 439.6
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 437.5
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 434.1
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 433.1
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 428.5
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 427.4
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 423.6
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 417.8
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 416.6
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 415.4
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 413.2
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 412.3
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 412.3
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 407.2
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 404.5
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 398.1
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 398.0
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 397.2
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 396.2
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 395.9
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 394.3
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 392.5
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 391.4
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 387.3
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 386.8
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 386.8
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 385.4
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 385.2
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 380.3
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 380.2
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 377.7
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 377.4
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 375.7
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 374.7
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 374.5
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 373.6
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 368.5
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 366.8
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 366.1
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 366.1
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 362.6
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 362.5
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 362.1
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 361.0
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 360.9
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 360.8
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 360.0
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 357.0
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 356.7
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 355.0
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 354.8
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 353.9
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 353.5
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 353.3
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 351.3
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 347.9
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 347.2
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 342.5
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 342.3
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 340.4
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 339.6
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 337.3
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 336.3
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 335.8
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 335.7
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 335.3
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 335.2
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 334.2
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 334.0
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 333.2
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 332.5
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 329.2
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 324.8
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 324.6
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 324.0
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 323.6
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 323.2
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 319.8
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 319.2
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 318.7
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 318.5
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 317.6
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 314.9
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 314.0
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 313.7
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 311.9
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 307.8
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 307.2
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 306.9
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 306.6
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 306.4
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 306.1
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 303.3
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 302.2
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 301.0
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 296.6
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 295.8
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 290.6
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 287.3
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 284.8
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 280.3
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 278.7
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 271.5
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 268.8
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 265.1
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 263.9
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 259.9
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 259.3
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 258.5
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 258.2
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 255.7
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 249.4
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 244.2
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 243.3
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 238.2
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 225.9
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 223.6
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 214.8
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 155.8
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

84.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 84.7
FF:10151-102I7 76 years, female 84.7

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

156.1
Pig sample Sample description nTPM
Amygdala
nTPM: 156.1
Samples: 4

Max nTPM: 214.2
Min nTPM: 132.3
Sample A Female 214.2
Sample B Female 143.1
Sample C Male 134.7
Sample D Male 132.3

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

233.5
Mouse sample Sample description nTPM
Amygdala
nTPM: 233.5
Samples: 4

Max nTPM: 246.1
Min nTPM: 226.4
Sample A Male 232.0
Sample B Male 229.4
Sample C Female 246.1
Sample D Female 226.4

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

12.4
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 12.4
513239 Antisense, RP_040810_01_D07, Mouse strain C57BL/6J (56 days, male) 12.6
112194293 Antisense, RP_110421_01_E04, Mouse strain C57BL/6J (56 days, male) 12.2

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