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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:328.8 nTPM
HPA Brain:174.9 nTPM
GTEx:328.8 nTPM
FANTOM5:82.5 Scaled Tags Per Million
Pig:400.1 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

174.9
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 161.2
1981 Female, age 72, midline 210.3
2048 Male, age 55, midline 157.4
2194 Female, age 79, both hemispheres 155.1
2816 Male, age 47, midline 142.2
2565 Male, age 75, midline 141.0
Cervical spinal cord, dorsal horn
nTPM: 174.9
2173 Female, age 72, unknown 219.1
2296 Male, age 66, both hemispheres 202.7
2069 Male, age 47, both hemispheres 187.1
1877 Male, age 55, unknown 150.5
2721 Male, age 90, both hemispheres 148.4
2297 Male, age 75, both hemispheres 141.6
Cervical spinal cord, ventral horn
nTPM: 167.6
2098 Female, age 72, unknown 228.8
2480 Male, age 75, both hemispheres 181.3
2809 Male, age 90, both hemispheres 163.5
2295 Male, age 66, both hemispheres 156.0
2068 Male, age 55, unknown 145.2
2820 Female, age 79, both hemispheres 130.5

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

328.8
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 328.8
Samples: 159

Max nTPM: 530.7
Min nTPM: 187.2
Std nTPM: 60.8
Median nTPM: 321.6
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 530.7
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 519.4
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 497.7
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 492.0
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 487.0
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 471.0
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 456.5
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 439.6
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 436.3
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 434.0
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 427.0
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 426.6
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 426.1
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 419.7
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 409.7
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 409.7
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 408.5
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 400.8
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 400.2
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 396.8
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 396.3
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 396.0
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 393.2
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 390.0
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 389.3
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 387.4
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 385.1
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 383.1
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 381.0
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 378.2
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 374.7
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 371.9
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 370.2
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 368.5
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 364.4
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 363.5
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 361.8
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 360.6
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 359.9
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 359.4
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 359.0
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 358.9
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 358.3
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 358.3
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 357.5
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 355.6
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 354.9
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 353.3
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 352.8
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 352.7
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 352.0
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 348.2
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 347.9
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 346.5
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 342.2
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 339.8
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 338.0
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 337.6
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 337.4
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 336.5
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 333.6
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 333.4
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 332.5
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 331.5
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 329.1
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 327.3
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 327.2
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 326.4
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 326.4
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 325.6
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 325.1
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 324.6
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 324.6
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 324.5
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 324.1
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 322.8
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 322.3
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 322.1
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 322.0
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 321.6
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 321.2
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 320.9
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 320.1
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 318.4
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 317.7
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 316.6
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 316.6
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 316.1
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 315.4
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 313.0
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 310.9
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 310.2
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 308.2
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 305.9
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 305.6
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 305.3
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 304.2
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 303.7
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 303.6
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 303.4
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 302.7
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 301.2
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 299.3
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 298.8
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 297.7
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 297.4
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 297.0
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 296.8
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 296.4
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 295.1
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 295.0
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 294.9
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 294.6
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 293.8
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 293.8
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 293.7
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 293.5
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 292.5
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 291.0
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 290.6
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 289.8
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 289.8
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 289.5
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 289.5
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 284.6
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 284.0
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 283.4
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 282.6
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 281.9
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 281.3
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 280.4
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 280.2
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 278.8
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 275.3
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 273.2
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 272.7
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 272.6
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 269.3
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 268.6
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 267.9
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 267.3
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 267.0
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 261.1
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 257.9
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 257.9
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 256.6
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 255.9
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 252.0
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 248.0
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 245.0
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 244.9
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 244.8
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 238.9
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 235.5
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 234.5
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 231.7
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 206.9
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 206.0
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 187.2
Show allShow less

SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

82.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 82.5
FF:10181-103D1 60 years, female 99.3
FF:10159-103A6 76 years, female 65.6

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

400.1
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 339.6
Samples: 4

Max nTPM: 363.6
Min nTPM: 324.8
Sample A Female 336.7
Sample B Female 324.8
Sample C Male 363.6
Sample D Male 333.1
Ventral spinal cord
nTPM: 400.1
Samples: 4

Max nTPM: 422.7
Min nTPM: 360.6
Sample A Female 360.6
Sample B Female 408.9
Sample C Male 408.0
Sample D Male 422.7

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