We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
BCAS2
HPA
RESOURCES
  • TISSUE
  • BRAIN
  • SINGLE CELL
  • SUBCELLULAR
  • CANCER
  • BLOOD
  • CELL LINE
  • STRUCTURE & INTERACTION
ABOUT
  • INTRODUCTION
  • HISTORY
  • ORGANIZATION
  • PUBLICATIONS
  • ANTIBODY SUBMISSION
  • ANTIBODY AVAILABILITY
  • ACKNOWLEDGMENTS
  • CONTACT
NEWS
  • NEWS ARTICLES
  • PRESS ROOM
LEARN
  • DICTIONARY
  • PROTEIN CLASSES
  • PROTEIN EVIDENCE
  • METHODS
  • EDUCATIONAL VIDEOS
DATA
  • DOWNLOADABLE DATA
  • PUBLICATION DATA
  • RELEASE HISTORY
HELP
  • ANTIBODY VALIDATION
  • ASSAYS & ANNOTATION
  • DISCLAIMER
  • HELP & FAQ
  • PRIVACY STATEMENT
  • LICENCE & CITATION
Fields »
Search result

Field
Term
Gene name
Class
Subclass
Class
Keyword
Chromosome
External id
Tissue
Cell type
Expression
Antibody panel
Tissue
Main location
Patient ID
Annotation
Tissue
Category
Tau score
Cluster
Reliability
Brain region
Category
Tau score
Brain region
Category
Tau score
Brain region
Category
Tau score
Cluster
Reliability
Tissue
Cell type
Enrichment
Cell type
Category
Tau score
Cell type
Category
Tau score
Cell type
Category
Tau score
Cell lineage
Category
Tau score
Cluster
Cluster
Location
Searches
Location
Cell line
Class
Type
Phase
Reliability
Cancer
Prognosis
Cancer
Category
Cancer
Category
Tau score
Cluster
Variants
Interacting gene (ensg_id)
Type
Number of interactions
Pathway
Category
Score
Score
Score
Validation
Validation
Validation
Validation
Antibodies
Data type
Column


  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • SUBCELL

  • CANCER

  • BLOOD

  • CELL LINE

  • STRUCT & INT

  • BCAS2
BRAIN THALAMUS Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Thalamus
THALAMUS - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
HPA Brain:34.1 nTPM
FANTOM5:64.1 Scaled Tags Per Million
Pig:49.9 nTPM
Mouse:60.2 nTPM

THALAMUS - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

34.1
Sample id Sample description nTPM
Anterior thalamic nucleus, ventral
nTPM: 25.0
2396 Male, age 61, right hemisphere 29.4
2032 Female, age 42, unknown 24.6
2497 Male, age 66, unknown 20.9
Centromedial thalamic nucleus
nTPM: 21.2
2401 Male, age 76, right hemisphere 27.6
2279 Female, age 85, left hemisphere 14.7
Habenula
nTPM: 34.1
1957 Male, age 80, both hemispheres 43.7
2203 Male, age 61, left hemisphere 40.2
2276 Male, age 66, unknown 27.2
2252 Male, age 62, unknown 25.4
Lateral geniculate body
nTPM: 29.4
2106 Female, age 67, right hemisphere 38.4
1953 Male, age 62, unknown 37.8
2035 Female, age 72, unknown 32.6
2575 Female, age 94, right hemisphere 30.3
2399 Male, age 61, left hemisphere 29.0
2841 Male, age 80, both hemispheres 24.4
2857 Male, age 74, right hemisphere 21.8
2659 Male, age 66, unknown 20.9
Lateral thalamic nuclei
nTPM: 26.9
2765 Female, age 67, both hemispheres 33.6
2573 Female, age 94, left hemisphere 32.2
1903 Male, age 76, left hemisphere 30.0
2577 Male, age 74, both hemispheres 19.3
2661 Female, age 72, unknown 19.3
Medial dorsal thalamic nucleus
nTPM: 28.2
2572 Female, age 94, right hemisphere 34.9
1971 Male, age 61, right hemisphere 34.6
2498 Male, age 66, unknown 34.1
2283 Male, age 80, right hemisphere 30.5
2026 Male, age 62, unknown 30.1
2039 Female, age 72, unknown 28.4
1859 Male, age 76, both hemispheres 28.3
1810 Male, age 48, unknown 28.0
1930 Female, age 42, unknown 27.0
2402 Female, age 67, both hemispheres 26.1
2576 Male, age 74, both hemispheres 23.6
2492 Male, age 75, right hemisphere 23.5
2660 Female, age 72, unknown 17.3
Medial geniculate body
nTPM: 26.4
1811 Female, age 42, unknown 36.6
2650 Female, age 94, left hemisphere 30.1
2049 Male, age 76, both hemispheres 26.7
2657 Male, age 74, right hemisphere 25.5
2207 Male, age 80, right hemisphere 23.9
2571 Male, age 75, right hemisphere 22.0
2217 Female, age 72, unknown 20.1
Nucleus reuniens
nTPM: 25.5
2212 Female, age 67, left hemisphere 37.2
2205 Male, age 80, left hemisphere 24.1
2210 Female, age 85, left hemisphere 15.3
Nucleus rhomboideus
nTPM: 23.0
2206 Male, age 80, both hemispheres 32.3
2213 Female, age 67, left hemisphere 23.5
2280 Female, age 85, left hemisphere 13.3
Posterior thalamic nucleus
nTPM: 27.1
2649 Female, age 94, both hemispheres 35.5
2266 Male, age 76, right hemisphere 29.8
2495 Female, age 67, right hemisphere 21.8
2655 Male, age 74, right hemisphere 21.1
Pulvinar
nTPM: 27.2
1972 Male, age 62, unknown 33.2
1932 Male, age 80, right hemisphere 32.9
1929 Male, age 48, unknown 28.9
2214 Male, age 76, right hemisphere 27.8
2499 Male, age 66, unknown 27.6
2398 Male, age 61, left hemisphere 27.4
1899 Female, age 42, unknown 26.1
2496 Female, age 67, right hemisphere 25.4
2724 Male, age 74, right hemisphere 23.7
2582 Female, age 72, unknown 19.3
Subthalamic nucleus
nTPM: 28.4
2406 Female, age 72, unknown 39.1
2282 Male, age 61, both hemispheres 33.8
2124 Male, age 62, unknown 32.6
2275 Male, age 66, unknown 28.2
2658 Male, age 74, both hemispheres 26.3
2779 Female, age 42, unknown 26.0
2056 Female, age 72, unknown 21.5
2216 Male, age 48, unknown 19.6
Ventral posterolateral thalamic nucleus
nTPM: 23.4
2197 Male, age 80, both hemispheres 29.5
2397 Male, age 61, right hemisphere 27.9
2740 Male, age 76, right hemisphere 26.7
2570 Male, age 75, right hemisphere 25.5
2578 Male, age 74, both hemispheres 18.1
2581 Female, age 72, unknown 12.4
Ventral posteromedial thalamic nucleus
nTPM: 25.7
2202 Male, age 61, left hemisphere 31.5
2758 Male, age 80, both hemispheres 26.5
2127 Male, age 76, right hemisphere 25.5
2281 Male, age 75, right hemisphere 23.3
2653 Male, age 74, both hemispheres 21.9
Ventral thalamic nuclei
nTPM: 24.8
1860 Male, age 76, both hemispheres 33.6
1845 Male, age 48, unknown 31.7
1912 Female, age 42, unknown 27.4
2580 Male, age 66, unknown 25.4
2285 Male, age 62, unknown 24.4
2291 Female, age 72, unknown 22.1
2204 Male, age 80, both hemispheres 21.8
2652 Male, age 74, left hemisphere 18.9
2858 Female, age 72, unknown 17.9
Zona incerta
nTPM: 24.4
2215 Male, age 66, unknown 29.3
2208 Male, age 80, right hemisphere 25.9
2822 Male, age 74, right hemisphere 25.7
2403 Male, age 62, unknown 24.5
2663 Female, age 72, unknown 16.6

THALAMUS - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

64.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Thalamus
Scaled Tags Per Million: 64.1
FF:10154-103A1 76 years, female 64.1

THALAMUS - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

49.9
Pig sample Sample description nTPM
Thalamus
nTPM: 49.9
Samples: 4

Max nTPM: 61.8
Min nTPM: 39.9
Sample A Female 61.8
Sample B Female 41.7
Sample C Male 56.1
Sample D Male 39.9

THALAMUS - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

60.2
Mouse sample Sample description nTPM
Thalamus
nTPM: 60.2
Samples: 4

Max nTPM: 63.4
Min nTPM: 58.3
Sample A Male 63.4
Sample B Male 60.1
Sample C Female 58.3
Sample D Female 59.1

Contact

  • NEWS ARTICLES
  • PRESS ROOM

The Project

  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS

The Human Protein Atlas

  • DOWNLOADABLE DATA
  • LICENCE & CITATION
  • HELP & FAQ
The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.


contact@proteinatlas.org