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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
HPA Brain:
318.2
nTPM
FANTOM5:
510.6
Scaled Tags Per Million
Pig:
249.4
nTPM
Allen mouse:
1.9
Expression energy
PONS - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
318.2
Sample id
Sample description
nTPM
Anterior cochlear nucleus, ventral nTPM: 304.7
2301
Female, age 85, both hemispheres
389.6
2090
Male, age 80, both hemispheres
324.3
2188
Female, age 91, both hemispheres
320.7
1984
Male, age 76, both hemispheres
184.2
Dorsal cochlear nucleus nTPM: 272.6
2370
Male, age 61, both hemispheres
337.3
2187
Female, age 91, both hemispheres
294.8
2802
Male, age 74, right hemisphere
261.7
2378
Male, age 80, both hemispheres
258.0
2058
Male, age 76, both hemispheres
210.9
Dorsal tegmental nucleus nTPM: 265.0
2358
Male, age 61, both hemispheres
293.0
2083
Male, age 80, both hemispheres
273.4
2326
Male, age 74, both hemispheres
270.3
1936
Male, age 76, left hemisphere
223.3
Dorsolateral tegmental area nTPM: 276.9
2337
Male, age 61, both hemispheres
372.0
2751
Female, age 85, both hemispheres
331.2
2654
Male, age 80, both hemispheres
277.0
2360
Male, age 74, both hemispheres
216.1
2141
Male, age 76, both hemispheres
188.1
Kolliker-Fuse nucleus nTPM: 300.8
2793
Female, age 91, left hemisphere
323.1
2315
Male, age 76, right hemisphere
316.6
2163
Male, age 80, both hemispheres
262.8
Lateral lemniscal nuclei nTPM: 264.4
2746
Female, age 85, left hemisphere
316.4
2453
Male, age 74, right hemisphere
300.0
2320
Female, age 91, left hemisphere
275.5
2036
Male, age 80, both hemispheres
239.4
2169
Male, age 76, both hemispheres
190.9
Lateral parabrachial nucleus nTPM: 282.3
2792
Male, age 76, both hemispheres
372.3
2013
Male, age 80, both hemispheres
316.2
2139
Female, age 85, right hemisphere
298.9
2790
Male, age 61, both hemispheres
141.8
Lateral vestibular nucleus nTPM: 278.8
2311
Male, age 80, both hemispheres
311.9
2184
Male, age 76, both hemispheres
245.6
Locus coeruleus nTPM: 154.2
2317
Female, age 72, unknown
194.0
2162
Male, age 80, both hemispheres
171.6
2123
Female, age 91, both hemispheres
153.8
1980
Male, age 76, both hemispheres
150.9
2788
Male, age 74, unknown
147.7
2720
Male, age 74, both hemispheres
146.9
2014
Male, age 55, unknown
114.5
Medial parabrachial nucleus nTPM: 260.4
2170
Female, age 91, both hemispheres
346.4
2854
Male, age 80, both hemispheres
287.6
2463
Female, age 85, right hemisphere
282.1
2786
Male, age 76, both hemispheres
231.9
2156
Male, age 61, both hemispheres
154.0
Medial periolivary nuclei nTPM: 282.3
2081
Male, age 80, both hemispheres
341.0
2791
Male, age 74, right hemisphere
338.4
2458
Female, age 91, both hemispheres
291.3
2171
Female, age 85, both hemispheres
229.5
2063
Male, age 76, both hemispheres
211.3
Motor facial nucleus nTPM: 260.4
2365
Male, age 74, right hemisphere
344.3
2126
Male, age 61, both hemispheres
302.5
2795
Female, age 91, both hemispheres
270.6
2697
Female, age 85, both hemispheres
268.0
2062
Male, age 76, both hemispheres
201.4
2327
Male, age 80, both hemispheres
175.5
Motor trigeminal nucleus nTPM: 273.6
2335
Male, age 61, both hemispheres
331.1
2560
Male, age 74, both hemispheres
298.8
2321
Female, age 91, both hemispheres
272.5
2079
Male, age 80, both hemispheres
254.4
2309
Male, age 76, both hemispheres
211.0
Nuclei of the trapezoid body nTPM: 226.0
2166
Male, age 80, both hemispheres
269.3
2368
Female, age 91, both hemispheres
251.3
1983
Male, age 76, both hemispheres
214.1
2735
Female, age 85, both hemispheres
206.9
2159
Male, age 61, both hemispheres
188.2
Nucleus raphe magnus nTPM: 224.4
2455
Male, age 74, both hemispheres
258.3
2051
Male, age 76, both hemispheres
254.1
2459
Female, age 91, both hemispheres
245.1
2328
Male, age 80, both hemispheres
222.0
2160
Male, age 61, both hemispheres
198.8
2172
Female, age 85, both hemispheres
167.9
Paramedian reticular nucleus nTPM: 251.4
2313
Male, age 61, both hemispheres
272.9
2057
Male, age 80, both hemispheres
250.2
2052
Male, age 76, both hemispheres
244.6
2050
Female, age 85, both hemispheres
237.8
Pedunculopontine tegmental nucleus nTPM: 224.7
2338
Male, age 61, both hemispheres
283.3
2334
Male, age 80, both hemispheres
212.8
1921
Female, age 85, both hemispheres
177.9
Pontine nuclei nTPM: 270.4
2115
Male, age 80, left hemisphere
342.5
2319
Female, age 91, both hemispheres
331.0
2109
Female, age 72, unknown
310.3
2454
Male, age 74, left hemisphere
268.3
1863
Male, age 55, unknown
257.3
2787
Female, age 85, both hemispheres
232.8
2727
Male, age 61, right hemisphere
212.0
1968
Male, age 76, left hemisphere
208.9
Pontine raphe nucleus nTPM: 202.7
2122
Female, age 85, midline
204.5
2853
Male, age 76, midline
201.0
Posteroventral cochlear nucleus nTPM: 318.2
2371
Male, age 61, both hemispheres
392.6
2341
Male, age 80, both hemispheres
383.8
2135
Female, age 91, both hemispheres
381.6
2070
Male, age 76, both hemispheres
232.7
2752
Female, age 85, both hemispheres
200.2
Principal sensory trigeminal nucleus nTPM: 236.1
2367
Female, age 91, left hemisphere
315.7
2324
Male, age 76, both hemispheres
245.4
2008
Male, age 80, left hemisphere
209.1
2158
Male, age 61, both hemispheres
174.0
Reticular pontine nucleus, caudal nTPM: 263.8
2559
Male, age 74, both hemispheres
302.1
2457
Female, age 91, both hemispheres
283.4
2092
Male, age 76, both hemispheres
255.8
2332
Male, age 80, right hemisphere
213.9
Reticular pontine nucleus, oral nTPM: 268.2
2361
Male, age 74, both hemispheres
304.7
1939
Male, age 80, both hemispheres
291.7
2366
Female, age 91, both hemispheres
255.3
2167
Male, age 76, both hemispheres
245.2
2012
Female, age 85, both hemispheres
243.9
Reticulotegmental nucleus nTPM: 267.5
2452
Male, age 74, both hemispheres
304.5
2333
Male, age 80, both hemispheres
293.5
2322
Female, age 91, both hemispheres
282.9
2325
Male, age 76, both hemispheres
189.3
Spinal trigeminal nucleus, oral nTPM: 217.2
2164
Male, age 80, both hemispheres
269.5
2737
Female, age 85, both hemispheres
191.3
1978
Male, age 76, both hemispheres
190.8
Subcoeruleus area nTPM: 249.9
2369
Female, age 85, left hemisphere
369.7
2451
Male, age 74, both hemispheres
270.0
1958
Male, age 80, both hemispheres
233.6
2089
Male, age 76, left hemisphere
223.9
2323
Female, age 91, left hemisphere
152.1
Superior olive nTPM: 265.5
2364
Male, age 74, right hemisphere
335.4
2561
Female, age 91, both hemispheres
275.0
2329
Male, age 80, right hemisphere
254.7
2020
Male, age 76, both hemispheres
252.5
1875
Female, age 85, both hemispheres
210.1
Ventral periolivary nuclei nTPM: 250.2
2023
Male, age 76, both hemispheres
274.0
2794
Female, age 91, left hemisphere
250.3
2165
Male, age 80, both hemispheres
243.3
2130
Female, age 85, both hemispheres
233.3
Ventrolateral tegmental area, A5 NE cell group nTPM: 278.9
2456
Female, age 91, both hemispheres
301.3
2840
Female, age 85, both hemispheres
294.6
2449
Male, age 74, both hemispheres
289.9
2161
Male, age 80, both hemispheres
280.5
2359
Male, age 61, both hemispheres
274.9
1959
Male, age 76, both hemispheres
232.3
PONS - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
249.4
Pig sample
Sample description
nTPM
Pons nTPM: 249.4
Samples: 4
Max nTPM: 317.1
Min nTPM: 184.2
Sample A
Female
249.8
Sample B
Female
184.2
Sample C
Male
246.4
Sample D
Male
317.1
PONS - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.
The Human Protein Atlas project is funded
