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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:122.6 nTPM
HPA Brain:84.4 nTPM
GTEx:122.6 nTPM
FANTOM5:233.2 Scaled Tags Per Million
Pig:38.6 nTPM
Mouse:95.7 nTPM
Allen mouse:2.1 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

84.4
Sample id Sample description nTPM
Amygdala
nTPM: 84.4
1987 Female, age 91, left hemisphere 103.4
2514 Male, age 75, right hemisphere 92.5
2695 Female, age 67, right hemisphere 77.4
2814 Male, age 76, right hemisphere 74.7
2517 Female, age 94, left hemisphere 74.1
Basal amygdala
nTPM: 74.8
2609 Male, age 75, right hemisphere 104.5
2110 Male, age 80, left hemisphere 83.3
1955 Male, age 76, both hemispheres 81.9
2243 Female, age 91, right hemisphere 73.2
2685 Female, age 94, left hemisphere 69.3
2827 Female, age 67, right hemisphere 36.8
Central amygdala
nTPM: 74.6
2515 Male, age 75, right hemisphere 93.3
2826 Female, age 94, left hemisphere 74.3
1905 Male, age 76, both hemispheres 72.7
2701 Female, age 91, right hemisphere 66.5
2239 Male, age 80, left hemisphere 66.4
Corticomedial amygdala
nTPM: 72.0
2428 Male, age 75, right hemisphere 103.1
2240 Male, age 76, both hemispheres 80.7
2829 Male, age 80, left hemisphere 74.6
2242 Female, age 91, right hemisphere 73.4
2429 Female, age 94, left hemisphere 63.2
2535 Female, age 67, right hemisphere 36.8
Lateral amygdala
nTPM: 65.8
2516 Male, age 75, right hemisphere 93.1
2256 Male, age 80, left hemisphere 71.8
1883 Male, age 76, both hemispheres 66.2
2255 Female, age 91, right hemisphere 64.8
2534 Female, age 94, left hemisphere 63.5
2830 Female, age 67, right hemisphere 35.1

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

122.6
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 122.6
Samples: 152

Max nTPM: 336.5
Min nTPM: 33.7
Std nTPM: 47.4
Median nTPM: 116.7
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 336.5
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 263.1
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 256.2
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 247.8
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 231.1
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 221.1
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 214.8
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 210.9
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 210.8
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 209.7
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 205.7
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 204.5
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 195.0
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 192.6
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 182.2
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 180.2
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 177.1
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 173.4
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 171.2
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 170.9
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 166.2
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 165.2
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 161.4
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 160.7
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 159.5
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 159.3
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 159.2
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 158.3
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 157.8
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 157.0
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 156.2
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 155.5
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 153.8
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 151.9
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 151.4
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 149.8
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 147.5
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 147.4
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 146.6
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 145.9
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 144.1
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 143.9
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 142.8
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 142.7
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 142.1
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 141.5
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 139.8
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 139.5
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 139.2
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 137.6
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 134.1
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 131.7
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 130.9
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 130.6
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 130.3
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 128.6
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 128.1
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 127.4
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 125.1
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 124.9
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 124.7
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 124.6
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 124.3
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 124.2
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 122.9
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 122.2
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 122.2
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 122.1
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 120.8
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 120.4
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 119.3
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 119.2
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 118.9
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 118.4
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 117.2
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 116.7
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 116.6
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 115.7
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 115.3
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 114.0
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 114.0
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 111.9
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 109.9
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 109.7
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 109.6
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 109.2
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 108.8
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 108.4
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 107.9
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 105.4
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 104.3
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 104.1
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 103.8
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 103.6
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 103.5
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 103.3
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 102.9
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 101.0
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 100.6
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 100.4
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 100.2
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 99.3
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 98.5
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 97.4
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 97.3
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 97.1
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 96.0
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 95.9
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 94.5
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 94.0
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 92.1
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 91.4
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 90.8
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 90.7
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 89.7
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 89.4
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 88.4
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 87.6
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 85.5
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 85.2
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 84.8
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 82.9
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 82.4
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 82.2
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 81.1
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 80.5
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 79.9
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 79.1
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 76.0
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 75.4
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 75.1
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 74.4
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 74.4
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 74.1
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 74.0
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 73.7
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 69.9
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 69.1
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 68.4
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 68.3
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 68.1
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 68.1
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 63.4
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 59.3
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 58.2
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 54.9
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 54.5
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 54.0
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 50.8
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 50.7
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 46.1
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 33.7
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

233.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 233.2
FF:10151-102I7 76 years, female 233.2

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

38.6
Pig sample Sample description nTPM
Amygdala
nTPM: 38.6
Samples: 4

Max nTPM: 45.9
Min nTPM: 31.9
Sample A Female 45.9
Sample B Female 42.0
Sample C Male 31.9
Sample D Male 34.7

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

95.7
Mouse sample Sample description nTPM
Amygdala
nTPM: 95.8
Samples: 4

Max nTPM: 112.6
Min nTPM: 79.7
Sample A Male 79.7
Sample B Male 86.1
Sample C Female 104.6
Sample D Female 112.6

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

2.1
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 2.1
686199 Antisense, RP_040916_01_A07, Mouse strain C57BL/6J (56 days, male) 2.1

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