We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
PRDX6
HPA
RESOURCES
  • TISSUE
  • BRAIN
  • SINGLE CELL
  • SUBCELLULAR
  • CANCER
  • BLOOD
  • CELL LINE
  • STRUCTURE & INTERACTION
ABOUT
  • INTRODUCTION
  • HISTORY
  • ORGANIZATION
  • PUBLICATIONS
  • ANTIBODY SUBMISSION
  • ANTIBODY AVAILABILITY
  • ACKNOWLEDGMENTS
  • CONTACT
NEWS
  • NEWS ARTICLES
  • PRESS ROOM
LEARN
  • DICTIONARY
  • PROTEIN CLASSES
  • PROTEIN EVIDENCE
  • METHODS
  • EDUCATIONAL VIDEOS
DATA
  • DOWNLOADABLE DATA
  • PUBLICATION DATA
  • RELEASE HISTORY
HELP
  • ANTIBODY VALIDATION
  • ASSAYS & ANNOTATION
  • DISCLAIMER
  • HELP & FAQ
  • PRIVACY STATEMENT
  • LICENCE & CITATION
Fields »
Search result

Field
Term
Gene name
Class
Subclass
Class
Keyword
Chromosome
External id
Tissue
Cell type
Expression
Antibody panel
Tissue
Main location
Patient ID
Annotation
Tissue
Category
Tau score
Cluster
Reliability
Brain region
Category
Tau score
Brain region
Category
Tau score
Brain region
Category
Tau score
Cluster
Reliability
Tissue
Cell type
Enrichment
Cell type
Category
Tau score
Cell type
Category
Tau score
Cell type
Category
Tau score
Cell lineage
Category
Tau score
Cluster
Cluster
Location
Searches
Location
Cell line
Class
Type
Phase
Reliability
Cancer
Prognosis
Cancer
Category
Cancer
Category
Tau score
Cluster
Variants
Interacting gene (ensg_id)
Type
Number of interactions
Pathway
Category
Score
Score
Score
Validation
Validation
Validation
Validation
Antibodies
Data type
Column


  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • SUBCELL

  • CANCER

  • BLOOD

  • CELL LINE

  • STRUCT & INT

  • PRDX6
BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:75.7 nTPM
HPA Brain:99.0 nTPM
GTEx:75.7 nTPM
FANTOM5:244.2 Scaled Tags Per Million
Pig:169.8 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

99.0
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 99.0
2048 Male, age 55, midline 148.3
1981 Female, age 72, midline 141.0
2194 Female, age 79, both hemispheres 76.6
2816 Male, age 47, midline 66.6
2565 Male, age 75, midline 62.3
Cervical spinal cord, dorsal horn
nTPM: 89.0
2173 Female, age 72, unknown 112.9
2721 Male, age 90, both hemispheres 100.0
2069 Male, age 47, both hemispheres 98.0
1877 Male, age 55, unknown 84.9
2296 Male, age 66, both hemispheres 73.7
2297 Male, age 75, both hemispheres 64.8
Cervical spinal cord, ventral horn
nTPM: 89.8
2098 Female, age 72, unknown 140.0
2809 Male, age 90, both hemispheres 101.8
2295 Male, age 66, both hemispheres 99.8
2480 Male, age 75, both hemispheres 78.0
2068 Male, age 55, unknown 64.6
2820 Female, age 79, both hemispheres 54.4

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

75.7
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 75.7
Samples: 159

Max nTPM: 172.8
Min nTPM: 33.0
Std nTPM: 25.3
Median nTPM: 70.4
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 172.8
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 153.0
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 151.5
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 146.4
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 144.4
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 129.4
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 128.7
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 121.8
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 116.1
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 115.3
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 114.3
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 114.2
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 113.6
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 112.9
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 112.6
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 112.4
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 111.7
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 111.2
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 111.2
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 110.8
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 109.0
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 108.0
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 106.6
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 106.2
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 105.6
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 103.6
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 102.7
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 102.5
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 100.6
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 97.2
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 92.8
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 92.6
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 91.7
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 91.2
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 90.6
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 90.0
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 89.7
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 89.5
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 89.1
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 88.7
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 88.3
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 87.6
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 87.3
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 87.2
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 86.7
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 85.5
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 84.3
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 83.8
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 83.3
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 82.6
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 81.9
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 81.5
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 81.4
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 81.3
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 81.2
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 80.6
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 78.8
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 78.6
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 78.1
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 78.1
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 78.0
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 77.7
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 77.4
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 77.1
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 76.7
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 74.0
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 74.0
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 73.9
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 73.6
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 73.0
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 73.0
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 72.9
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 72.1
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 71.8
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 71.5
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 71.5
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 71.1
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 71.0
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 70.4
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 70.4
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 69.9
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 69.8
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 69.1
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 69.0
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 68.1
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 67.7
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 66.7
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 66.3
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 66.2
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 66.0
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 65.6
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 65.2
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 65.0
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 64.9
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 64.0
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 63.7
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 63.4
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 63.4
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 63.3
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 62.8
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 62.8
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 62.3
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 62.0
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 61.3
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 61.2
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 60.9
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 60.4
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 60.3
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 60.0
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 59.5
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 59.3
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 59.1
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 59.0
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 58.6
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 58.2
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 57.6
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 57.5
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 57.3
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 56.8
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 56.8
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 56.7
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 56.5
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 56.4
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 56.4
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 56.3
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 55.0
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 54.4
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 54.4
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 54.4
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 54.3
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 54.2
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 54.1
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 53.6
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 53.2
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 53.0
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 52.6
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 52.6
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 52.5
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 52.2
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 52.0
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 51.3
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 51.3
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 51.1
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 50.8
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 50.7
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 50.2
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 48.3
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 47.7
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 46.8
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 46.4
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 46.3
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 46.3
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 45.8
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 44.8
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 41.9
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 37.6
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 37.2
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 33.4
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 33.0
Show allShow less

SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

244.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 244.2
FF:10181-103D1 60 years, female 284.7
FF:10159-103A6 76 years, female 203.8

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

169.8
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 155.2
Samples: 4

Max nTPM: 197.6
Min nTPM: 126.2
Sample A Female 126.2
Sample B Female 153.5
Sample C Male 197.6
Sample D Male 143.5
Ventral spinal cord
nTPM: 169.8
Samples: 4

Max nTPM: 174.4
Min nTPM: 165.5
Sample A Female 174.4
Sample B Female 171.3
Sample C Male 168.1
Sample D Male 165.5

Contact

  • NEWS ARTICLES
  • PRESS ROOM

The Project

  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS

The Human Protein Atlas

  • DOWNLOADABLE DATA
  • LICENCE & CITATION
  • HELP & FAQ
The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.


contact@proteinatlas.org