We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
STMN1
HPA
RESOURCES
  • TISSUE
  • BRAIN
  • SINGLE CELL
  • SUBCELLULAR
  • CANCER
  • BLOOD
  • CELL LINE
  • STRUCTURE & INTERACTION
ABOUT
  • INTRODUCTION
  • HISTORY
  • ORGANIZATION
  • PUBLICATIONS
  • ANTIBODY SUBMISSION
  • ANTIBODY AVAILABILITY
  • ACKNOWLEDGMENTS
  • CONTACT
NEWS
  • NEWS ARTICLES
  • PRESS ROOM
LEARN
  • DICTIONARY
  • PROTEIN CLASSES
  • PROTEIN EVIDENCE
  • METHODS
  • EDUCATIONAL VIDEOS
DATA
  • DOWNLOADABLE DATA
  • PUBLICATION DATA
  • RELEASE HISTORY
HELP
  • ANTIBODY VALIDATION
  • ASSAYS & ANNOTATION
  • DISCLAIMER
  • HELP & FAQ
  • PRIVACY STATEMENT
  • LICENCE & CITATION
Fields »
Search result

Field
Term
Gene name
Class
Subclass
Class
Keyword
Chromosome
External id
Tissue
Cell type
Expression
Antibody panel
Tissue
Main location
Patient ID
Annotation
Tissue
Category
Tau score
Cluster
Reliability
Brain region
Category
Tau score
Brain region
Category
Tau score
Brain region
Category
Tau score
Cluster
Reliability
Tissue
Cell type
Enrichment
Cell type
Category
Tau score
Cell type
Category
Tau score
Cell type
Category
Tau score
Cell lineage
Category
Tau score
Cluster
Cluster
Location
Searches
Location
Cell line
Class
Type
Phase
Reliability
Cancer
Prognosis
Cancer
Category
Cancer
Category
Tau score
Cluster
Variants
Interacting gene (ensg_id)
Type
Number of interactions
Pathway
Category
Score
Score
Score
Validation
Validation
Validation
Validation
Antibodies
Data type
Column


  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • SUBCELL

  • CANCER

  • BLOOD

  • CELL LINE

  • STRUCT & INT

  • STMN1
BRAIN MEDULLA OBLONGATA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Medulla oblongata
MEDULLA OBLONGATA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
HPA Brain:545.9 nTPM
FANTOM5:269.1 Scaled Tags Per Million
Pig:824.4 nTPM
Allen mouse:4.3 Expression energy

MEDULLA OBLONGATA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

545.9
Sample id Sample description nTPM
Area postrema
nTPM: 257.7
2306 Male, age 80, both hemispheres 333.7
2054 Male, age 76, both hemispheres 284.1
2799 Male, age 61, both hemispheres 155.3
Dorsal medullary reticular nucleus
nTPM: 323.5
2040 Female, age 85, both hemispheres 408.5
2373 Male, age 61, both hemispheres 281.7
2088 Male, age 76, both hemispheres 280.3
Dorsal motor vagal complex
nTPM: 280.0
2844 Male, age 55, unknown 358.8
2133 Female, age 91, both hemispheres 340.5
2813 Female, age 72, unknown 316.2
2000 Male, age 74, unknown 311.7
2185 Male, age 76, both hemispheres 287.8
2807 Female, age 85, both hemispheres 269.9
2643 Male, age 74, both hemispheres 206.1
2797 Male, age 61, both hemispheres 148.8
Gigantocellular reticular nuclei, medullary
nTPM: 393.9
2387 Female, age 91, both hemispheres 525.5
2314 Male, age 61, both hemispheres 511.7
1876 Female, age 85, both hemispheres 440.4
2310 Male, age 80, both hemispheres 332.8
2462 Male, age 74, both hemispheres 301.5
2022 Male, age 76, right hemisphere 251.6
Gigantocellular reticular nuclei, pars
nTPM: 349.9
2336 Male, age 61, both hemispheres 381.0
2084 Female, age 85, both hemispheres 345.5
2330 Male, age 80, both hemispheres 345.0
2706 Male, age 80, both hemispheres 343.6
2168 Male, age 76, both hemispheres 334.6
Inferior olive
nTPM: 498.6
2563 Male, age 74, both hemispheres 629.6
2628 Female, age 91, both hemispheres 518.4
2178 Male, age 61, both hemispheres 479.3
2085 Female, age 85, both hemispheres 474.2
2379 Male, age 80, both hemispheres 391.8
Lateral medullary reticular nucleus
nTPM: 526.0
2305 Male, age 74, both hemispheres 903.4
2374 Male, age 61, both hemispheres 496.6
2804 Female, age 91, both hemispheres 494.5
2852 Male, age 80, both hemispheres 462.2
2190 Female, age 85, both hemispheres 440.4
2044 Male, age 76, both hemispheres 358.9
Medial olivary nucleus
nTPM: 521.0
1962 Male, age 76, both hemispheres 597.1
2138 Female, age 91, both hemispheres 551.6
1943 Male, age 61, both hemispheres 526.5
2851 Male, age 80, both hemispheres 408.6
Medial vestibular nucleus
nTPM: 411.4
2801 Male, age 74, both hemispheres 726.1
2803 Female, age 91, both hemispheres 480.8
2624 Male, age 61, both hemispheres 356.7
2093 Male, age 80, both hemispheres 337.8
2743 Female, age 85, both hemispheres 326.2
2134 Male, age 76, both hemispheres 241.0
Motor hypoglossal nucleus
nTPM: 388.7
2125 Female, age 91, both hemispheres 503.2
2182 Male, age 80, both hemispheres 450.7
2132 Female, age 85, both hemispheres 430.1
2461 Male, age 61, both hemispheres 323.1
2277 Male, age 76, both hemispheres 236.4
Nucleus ambiguus
nTPM: 379.5
2071 Male, age 76, both hemispheres 504.3
2096 Female, age 85, both hemispheres 254.8
Nucleus cuneatus
nTPM: 342.9
2808 Female, age 85, both hemispheres 470.9
2380 Male, age 80, both hemispheres 440.0
2381 Male, age 80, both hemispheres 415.1
2564 Male, age 74, both hemispheres 412.3
2376 Male, age 61, both hemispheres 308.1
2100 Male, age 76, both hemispheres 303.7
2131 Male, age 76, both hemispheres 259.1
2805 Female, age 91, both hemispheres 252.1
2562 Male, age 61, both hemispheres 224.6
Nucleus gracilis
nTPM: 427.7
2627 Male, age 74, both hemispheres 556.2
2382 Male, age 80, both hemispheres 457.2
2299 Female, age 85, both hemispheres 269.8
Nucleus raphe obscurus
nTPM: 545.9
2845 Female, age 85, midline 717.0
2142 Male, age 76, midline 465.5
2800 Male, age 61, midline 455.4
Nucleus raphe pallidus
nTPM: 507.0
2145 Male, age 76, midline 616.2
1924 Male, age 61, midline 460.8
2183 Male, age 80, midline 444.0
Nucleus tractus solitarii
nTPM: 253.2
2656 Male, age 76, both hemispheres 294.1
2144 Female, age 91, right hemisphere 288.3
2191 Female, age 85, both hemispheres 215.3
2307 Male, age 80, both hemispheres 215.0
Parvicellular reticular nuclei
nTPM: 381.3
2095 Male, age 76, both hemispheres 396.5
2119 Male, age 80, both hemispheres 390.6
2558 Male, age 74, both hemispheres 356.7
Parvicellular reticular nuclei, medullary
nTPM: 339.9
2189 Female, age 91, both hemispheres 418.5
2181 Male, age 80, left hemisphere 309.6
2091 Female, age 85, both hemispheres 291.5
Peritrigeminal nucleus
nTPM: 366.7
2136 Male, age 76, both hemispheres 384.9
2179 Male, age 61, both hemispheres 365.9
2067 Female, age 85, both hemispheres 349.3
Prepositus hypoglossal nucleus
nTPM: 372.1
2855 Female, age 85, right hemisphere 518.6
2086 Male, age 80, both hemispheres 225.6
Spinal trigeminal nucleus, caudal
nTPM: 373.9
2312 Male, age 61, both hemispheres 471.0
2390 Female, age 91, both hemispheres 413.1
2642 Male, age 74, both hemispheres 347.1
2308 Male, age 80, both hemispheres 341.2
2447 Male, age 76, both hemispheres 297.2
Spinal trigeminal nucleus, interpolar
nTPM: 333.9
2389 Female, age 91, both hemispheres 417.6
2386 Female, age 85, both hemispheres 349.0
2033 Male, age 80, both hemispheres 344.7
2066 Male, age 76, right hemisphere 288.7
2625 Male, age 61, both hemispheres 269.7
Spinal vestibular nucleus
nTPM: 362.1
2806 Female, age 85, both hemispheres 455.0
2186 Female, age 91, both hemispheres 388.9
2384 Male, age 74, both hemispheres 383.7
2748 Male, age 76, both hemispheres 375.5
2780 Male, age 80, both hemispheres 300.1
2796 Male, age 61, both hemispheres 269.2
Superior vestibular nucleus
nTPM: 360.5
2383 Male, age 74, both hemispheres 442.4
2015 Male, age 80, both hemispheres 336.8
2061 Male, age 76, both hemispheres 302.5
Ventral medullary reticular nucleus
nTPM: 361.1
2372 Male, age 61, both hemispheres 381.9
2060 Male, age 76, both hemispheres 340.3
Ventrolateral medulla, A1-C1 cell groups
nTPM: 398.1
2180 Male, age 61, both hemispheres 485.3
2302 Female, age 91, both hemispheres 434.1
2118 Male, age 80, both hemispheres 394.0
2741 Female, age 85, both hemispheres 339.9
1986 Male, age 76, both hemispheres 337.0

MEDULLA OBLONGATA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

269.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Medulla oblongata
Scaled Tags Per Million: 269.1
FF:10174-103C3 60 years, female 352.7
FF:10038-101F2 18-64 years, mixed 272.3
FF:10155-103A2 76 years, female 182.4

MEDULLA OBLONGATA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

824.4
Pig sample Sample description nTPM
Medulla oblongata
nTPM: 824.4
Samples: 4

Max nTPM: 1031.1
Min nTPM: 595.3
Sample A Female 813.9
Sample B Female 595.3
Sample C Male 857.1
Sample D Male 1031.1

MEDULLA OBLONGATA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

4.3
Allen experiment id Experiment description Expression energy
Medulla oblongata
Expression energy: 4.3
71016595 Antisense, RP_050725_03_A05, Mouse strain C57BL/6J (56 days, male) 4.7
68632984 Antisense, RP_050125_02_B12, Mouse strain C57BL/6J (56 days, male) 3.8

Contact

  • NEWS ARTICLES
  • PRESS ROOM

The Project

  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS

The Human Protein Atlas

  • DOWNLOADABLE DATA
  • LICENCE & CITATION
  • HELP & FAQ
The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.


contact@proteinatlas.org