We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
STMN1
HPA
RESOURCES
  • TISSUE
  • BRAIN
  • SINGLE CELL
  • SUBCELLULAR
  • CANCER
  • BLOOD
  • CELL LINE
  • STRUCTURE & INTERACTION
ABOUT
  • INTRODUCTION
  • HISTORY
  • ORGANIZATION
  • PUBLICATIONS
  • ANTIBODY SUBMISSION
  • ANTIBODY AVAILABILITY
  • ACKNOWLEDGMENTS
  • CONTACT
NEWS
  • NEWS ARTICLES
  • PRESS ROOM
LEARN
  • DICTIONARY
  • PROTEIN CLASSES
  • PROTEIN EVIDENCE
  • METHODS
  • EDUCATIONAL VIDEOS
DATA
  • DOWNLOADABLE DATA
  • PUBLICATION DATA
  • RELEASE HISTORY
HELP
  • ANTIBODY VALIDATION
  • ASSAYS & ANNOTATION
  • DISCLAIMER
  • HELP & FAQ
  • PRIVACY STATEMENT
  • LICENCE & CITATION
Fields »
Search result

Field
Term
Gene name
Class
Subclass
Class
Keyword
Chromosome
External id
Tissue
Cell type
Expression
Antibody panel
Tissue
Main location
Patient ID
Annotation
Tissue
Category
Tau score
Cluster
Reliability
Brain region
Category
Tau score
Brain region
Category
Tau score
Brain region
Category
Tau score
Cluster
Reliability
Tissue
Cell type
Enrichment
Cell type
Category
Tau score
Cell type
Category
Tau score
Cell type
Category
Tau score
Cell lineage
Category
Tau score
Cluster
Cluster
Location
Searches
Location
Cell line
Class
Type
Phase
Reliability
Cancer
Prognosis
Cancer
Category
Cancer
Category
Tau score
Cluster
Variants
Interacting gene (ensg_id)
Type
Number of interactions
Pathway
Category
Score
Score
Score
Validation
Validation
Validation
Validation
Antibodies
Data type
Column


  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • SUBCELL

  • CANCER

  • BLOOD

  • CELL LINE

  • STRUCT & INT

  • STMN1
BRAIN THALAMUS Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Thalamus
THALAMUS - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
HPA Brain:485.8 nTPM
FANTOM5:208.2 Scaled Tags Per Million
Pig:1031.5 nTPM
Mouse:1193.3 nTPM
Allen mouse:10.6 Expression energy

THALAMUS - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

485.8
Sample id Sample description nTPM
Anterior thalamic nucleus, ventral
nTPM: 292.4
2032 Female, age 42, unknown 310.8
2396 Male, age 61, right hemisphere 291.3
2497 Male, age 66, unknown 275.0
Centromedial thalamic nucleus
nTPM: 296.4
2401 Male, age 76, right hemisphere 353.6
2279 Female, age 85, left hemisphere 239.2
Habenula
nTPM: 485.8
2203 Male, age 61, left hemisphere 676.9
1957 Male, age 80, both hemispheres 623.9
2252 Male, age 62, unknown 364.6
2276 Male, age 66, unknown 277.9
Lateral geniculate body
nTPM: 386.0
2575 Female, age 94, right hemisphere 605.2
2106 Female, age 67, right hemisphere 537.8
2841 Male, age 80, both hemispheres 425.7
1953 Male, age 62, unknown 371.3
2399 Male, age 61, left hemisphere 338.8
2659 Male, age 66, unknown 299.0
2035 Female, age 72, unknown 294.7
2857 Male, age 74, right hemisphere 215.4
Lateral thalamic nuclei
nTPM: 410.9
2765 Female, age 67, both hemispheres 593.8
1903 Male, age 76, left hemisphere 482.7
2573 Female, age 94, left hemisphere 458.4
2577 Male, age 74, both hemispheres 277.1
2661 Female, age 72, unknown 242.3
Medial dorsal thalamic nucleus
nTPM: 391.3
1971 Male, age 61, right hemisphere 559.3
2283 Male, age 80, right hemisphere 515.8
2026 Male, age 62, unknown 452.2
1859 Male, age 76, both hemispheres 449.5
2498 Male, age 66, unknown 447.6
2039 Female, age 72, unknown 413.2
1810 Male, age 48, unknown 405.9
2402 Female, age 67, both hemispheres 384.6
1930 Female, age 42, unknown 370.1
2660 Female, age 72, unknown 310.4
2492 Male, age 75, right hemisphere 302.1
2576 Male, age 74, both hemispheres 281.3
2572 Female, age 94, right hemisphere 195.1
Medial geniculate body
nTPM: 331.4
1811 Female, age 42, unknown 426.7
2207 Male, age 80, right hemisphere 410.2
2217 Female, age 72, unknown 354.7
2049 Male, age 76, both hemispheres 315.2
2657 Male, age 74, right hemisphere 315.2
2650 Female, age 94, left hemisphere 260.9
2571 Male, age 75, right hemisphere 236.8
Nucleus reuniens
nTPM: 456.4
2212 Female, age 67, left hemisphere 633.9
2210 Female, age 85, left hemisphere 409.7
2205 Male, age 80, left hemisphere 325.6
Nucleus rhomboideus
nTPM: 370.3
2206 Male, age 80, both hemispheres 513.7
2280 Female, age 85, left hemisphere 300.3
2213 Female, age 67, left hemisphere 296.9
Posterior thalamic nucleus
nTPM: 238.7
2266 Male, age 76, right hemisphere 330.4
2495 Female, age 67, right hemisphere 293.6
2649 Female, age 94, both hemispheres 193.7
2655 Male, age 74, right hemisphere 137.2
Pulvinar
nTPM: 352.0
2214 Male, age 76, right hemisphere 454.8
1929 Male, age 48, unknown 413.4
2398 Male, age 61, left hemisphere 409.8
1972 Male, age 62, unknown 370.9
1932 Male, age 80, right hemisphere 351.7
2496 Female, age 67, right hemisphere 347.9
2724 Male, age 74, right hemisphere 324.8
2582 Female, age 72, unknown 310.1
1899 Female, age 42, unknown 294.0
2499 Male, age 66, unknown 242.4
Subthalamic nucleus
nTPM: 442.0
2275 Male, age 66, unknown 651.0
2124 Male, age 62, unknown 543.4
2658 Male, age 74, both hemispheres 484.1
2282 Male, age 61, both hemispheres 444.8
2406 Female, age 72, unknown 418.4
2779 Female, age 42, unknown 351.9
2216 Male, age 48, unknown 327.1
2056 Female, age 72, unknown 315.1
Ventral posterolateral thalamic nucleus
nTPM: 353.0
2570 Male, age 75, right hemisphere 515.0
2197 Male, age 80, both hemispheres 434.3
2740 Male, age 76, right hemisphere 355.0
2578 Male, age 74, both hemispheres 306.0
2397 Male, age 61, right hemisphere 305.0
2581 Female, age 72, unknown 202.7
Ventral posteromedial thalamic nucleus
nTPM: 433.8
2202 Male, age 61, left hemisphere 536.0
2281 Male, age 75, right hemisphere 501.3
2127 Male, age 76, right hemisphere 431.4
2758 Male, age 80, both hemispheres 409.3
2653 Male, age 74, both hemispheres 290.7
Ventral thalamic nuclei
nTPM: 370.4
1860 Male, age 76, both hemispheres 426.2
1912 Female, age 42, unknown 421.7
2652 Male, age 74, left hemisphere 419.5
2580 Male, age 66, unknown 394.2
2204 Male, age 80, both hemispheres 383.3
1845 Male, age 48, unknown 375.9
2285 Male, age 62, unknown 338.4
2291 Female, age 72, unknown 302.4
2858 Female, age 72, unknown 271.9
Zona incerta
nTPM: 456.9
2215 Male, age 66, unknown 663.6
2822 Male, age 74, right hemisphere 591.6
2208 Male, age 80, right hemisphere 391.4
2403 Male, age 62, unknown 359.5
2663 Female, age 72, unknown 278.3

THALAMUS - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

208.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Thalamus
Scaled Tags Per Million: 208.2
FF:10154-103A1 76 years, female 208.2

THALAMUS - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1031.5
Pig sample Sample description nTPM
Thalamus
nTPM: 1031.5
Samples: 4

Max nTPM: 1624.7
Min nTPM: 577.5
Sample A Female 1624.7
Sample B Female 577.5
Sample C Male 847.3
Sample D Male 1076.4

THALAMUS - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1193.3
Mouse sample Sample description nTPM
Thalamus
nTPM: 1193.3
Samples: 4

Max nTPM: 1247.2
Min nTPM: 1101.9
Sample A Male 1101.9
Sample B Male 1218.7
Sample C Female 1247.2
Sample D Female 1205.4

THALAMUS - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

10.6
Allen experiment id Experiment description Expression energy
Thalamus
Expression energy: 10.6
71016595 Antisense, RP_050725_03_A05, Mouse strain C57BL/6J (56 days, male) 12.0
68632984 Antisense, RP_050125_02_B12, Mouse strain C57BL/6J (56 days, male) 9.3

Contact

  • NEWS ARTICLES
  • PRESS ROOM

The Project

  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS

The Human Protein Atlas

  • DOWNLOADABLE DATA
  • LICENCE & CITATION
  • HELP & FAQ
The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.


contact@proteinatlas.org