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  • STMN1
TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN ORAL MUCOSA
OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE SMOOTH MUSCLE
SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Low
Neuronal cells: Not detected
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
GTEx:207.4 nTPM
FANTOM5:71.5 Scaled Tags Per Million
Pig:227.2 nTPM

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA068438Antibody CAB010107
Glial cells LowHigh
Neuronal cells Not detectedMedium





CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

207.4
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 207.4
Samples: 246

Max nTPM: 909.0
Min nTPM: 79.7
Std nTPM: 95.7
Median nTPM: 184.4
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 909.0
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 860.0
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 688.7
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 544.3
GTEX-12WSH-0011-R5b-SM-5P9F3 50-59 years, male 454.2
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 435.9
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 428.9
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 403.1
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 389.9
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 385.1
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 384.1
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 380.2
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 373.8
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 372.8
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 336.4
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 333.1
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 322.0
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 312.2
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 302.7
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 301.6
GTEX-TSE9-0011-R5A-SM-3DB7J 60-69 years, female 301.5
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 299.4
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 295.8
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 295.1
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 290.4
GTEX-UTHO-0011-R5A-SM-3GIJD 60-69 years, male 283.0
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 281.1
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 279.5
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 279.0
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 277.3
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 269.7
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 266.3
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 264.3
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 262.3
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 261.4
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 261.1
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 260.5
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 259.9
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 259.8
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 259.4
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 259.0
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 257.8
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 245.0
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 244.9
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 242.9
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 242.4
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 242.0
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 241.1
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 241.0
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 240.6
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 240.0
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 237.0
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 235.8
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 234.9
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 233.7
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 231.9
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 231.8
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 231.3
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 230.0
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 229.9
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 225.3
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 224.1
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 223.8
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 223.7
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 223.5
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 223.0
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 222.7
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 222.7
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 221.8
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 220.5
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 218.1
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 217.9
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 217.7
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 215.8
GTEX-RVPV-0011-R5A-SM-2TF69 60-69 years, male 214.4
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 214.1
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 213.3
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 213.0
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 210.8
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 209.8
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 208.3
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 207.0
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 206.4
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 206.3
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 206.0
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 205.7
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 205.5
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 205.5
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 205.3
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 205.3
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 205.0
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 204.1
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 202.9
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 202.7
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 202.5
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 202.5
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 202.4
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 201.8
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 201.7
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 201.3
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 201.3
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 200.9
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 198.3
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 196.3
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 194.9
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 194.8
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 194.5
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 194.5
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 194.4
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 194.1
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 194.0
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 193.6
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 191.0
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 190.2
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 190.0
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 188.8
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 187.8
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 186.8
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 186.0
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 185.8
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 185.7
GTEX-P44G-0011-R5A-SM-2I3FA 30-39 years, male 185.5
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 184.5
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 184.3
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 184.0
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 183.8
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 183.6
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 182.7
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 182.5
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 182.2
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 181.6
GTEX-18464-0011-R5b-SM-718A6 50-59 years, male 181.1
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 181.0
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 180.7
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 180.6
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 180.2
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 180.1
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 179.8
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 179.7
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 179.5
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 179.5
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 179.3
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 179.0
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 178.1
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 177.6
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 177.2
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 176.9
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 174.9
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 174.6
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 174.3
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 174.1
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 173.8
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 173.7
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 173.2
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 172.6
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 172.5
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 172.4
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 171.9
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 171.2
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 169.5
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 169.5
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 169.4
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 169.1
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 168.8
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 168.6
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 168.3
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 165.2
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 164.8
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 164.1
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 164.1
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 162.3
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 161.5
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 161.3
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 161.3
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 161.0
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 160.8
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 160.4
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 160.2
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 159.3
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 158.3
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 158.0
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 157.8
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 156.1
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 154.6
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 154.3
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 154.3
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 153.8
GTEX-R55E-0011-R5A-SM-2TC5N 20-29 years, male 153.8
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 153.6
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 152.7
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 152.3
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 151.9
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 151.7
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 150.7
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 150.6
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 150.4
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 150.2
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 149.4
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 148.5
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 148.4
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 146.6
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 146.0
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 144.7
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 144.1
GTEX-RU72-0011-R5A-SM-2TF6U 50-59 years, female 143.6
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 143.3
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 141.6
GTEX-P44H-0011-R5A-SM-2XCEX 40-49 years, male 141.6
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 141.3
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 140.7
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 140.4
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 139.3
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 139.3
GTEX-S7SE-0011-R5A-SM-2XCDA 50-59 years, male 139.1
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 138.6
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 138.3
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 138.3
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 137.9
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 136.5
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 136.4
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 135.4
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 133.5
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 133.5
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 133.0
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 133.0
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 132.1
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 131.8
GTEX-OXRN-0011-R5A-SM-2I5EF 50-59 years, male 131.2
GTEX-N7MT-0011-R5a-SM-2I3G6 60-69 years, female 130.6
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 130.1
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 129.7
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 128.9
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 128.7
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 128.5
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 123.9
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 123.4
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 122.7
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 118.8
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 117.7
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 117.7
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 117.3
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 113.6
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 109.8
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 107.7
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 101.5
GTEX-OXRO-0011-R5A-SM-2I5EG 60-69 years, female 79.7
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

71.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 71.5
FF:10164-103B2 76 years, female 71.5

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

227.2
Pig sample Sample description nTPM
Caudate
nTPM: 227.3
Samples: 4

Max nTPM: 265.0
Min nTPM: 207.7
Sample A Female 265.0
Sample B Female 215.8
Sample C Male 220.5
Sample D Male 207.7

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