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  • STMN1
TISSUE PRIMARY DATA SPINAL CORD Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN ORAL MUCOSA
OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE SMOOTH MUSCLE
SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Tissue proteome
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:1340.2 nTPM
HPA Brain:495.7 nTPM
GTEx:1340.2 nTPM
FANTOM5:405.9 Scaled Tags Per Million
Pig:1075.6 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

495.7
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 398.9
1981 Female, age 72, midline 448.8
2816 Male, age 47, midline 448.0
2194 Female, age 79, both hemispheres 398.9
2565 Male, age 75, midline 359.7
2048 Male, age 55, midline 339.2
Cervical spinal cord, dorsal horn
nTPM: 495.7
2296 Male, age 66, both hemispheres 1020.2
2173 Female, age 72, unknown 556.8
2069 Male, age 47, both hemispheres 469.7
2297 Male, age 75, both hemispheres 339.8
1877 Male, age 55, unknown 323.6
2721 Male, age 90, both hemispheres 263.9
Cervical spinal cord, ventral horn
nTPM: 373.8
2480 Male, age 75, both hemispheres 438.4
2098 Female, age 72, unknown 423.0
2820 Female, age 79, both hemispheres 370.8
2295 Male, age 66, both hemispheres 350.0
2809 Male, age 90, both hemispheres 336.8
2068 Male, age 55, unknown 323.8

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1340.2
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 1340.2
Samples: 159

Max nTPM: 2927.8
Min nTPM: 386.4
Std nTPM: 460.3
Median nTPM: 1315.8
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 2927.8
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 2479.3
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 2433.6
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 2326.6
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 2290.0
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 2261.3
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 2218.7
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 2153.9
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 2114.5
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 2078.7
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 2069.7
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 1941.9
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 1940.7
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 1937.9
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 1931.6
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 1928.9
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 1917.5
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 1874.1
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 1869.0
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 1861.4
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 1859.4
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 1854.6
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 1818.6
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 1799.4
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 1797.2
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 1792.0
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 1789.8
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 1747.4
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 1742.5
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 1742.0
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 1737.1
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 1731.7
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 1726.7
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 1717.4
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 1715.3
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 1712.1
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 1709.3
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 1708.1
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 1707.1
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 1700.1
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 1679.5
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 1666.5
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 1661.6
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 1656.2
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 1651.1
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 1616.8
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 1605.5
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 1598.0
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 1585.0
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 1560.0
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 1559.7
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 1532.0
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 1526.0
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 1520.1
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 1500.3
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 1498.0
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 1497.2
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 1469.5
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 1459.7
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 1457.8
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 1450.5
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 1439.4
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 1437.7
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 1415.9
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 1409.8
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 1409.6
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 1394.4
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 1372.8
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 1368.4
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 1362.9
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 1357.6
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 1354.4
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 1351.6
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 1349.4
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 1346.7
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 1345.2
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 1344.5
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 1337.6
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 1333.5
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 1315.8
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 1313.3
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 1303.7
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 1296.4
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 1295.1
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 1285.5
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 1279.9
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 1265.5
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 1253.1
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 1239.7
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 1228.8
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 1220.6
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 1205.4
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 1202.1
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 1197.3
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 1196.6
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 1196.4
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 1189.6
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 1182.4
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 1178.0
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 1172.5
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 1167.2
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 1167.0
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 1166.2
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 1164.1
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 1146.1
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 1135.4
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 1114.0
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 1113.4
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 1110.9
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 1080.8
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 1078.9
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 1078.5
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 1078.4
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 1075.7
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 1073.6
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 1066.2
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 1042.8
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 1029.5
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 1024.4
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 1018.4
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 1014.7
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 977.2
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 975.0
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 973.5
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 971.8
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 962.9
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 939.3
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 932.0
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 923.3
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 903.7
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 902.1
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 895.0
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 884.1
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 877.5
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 865.5
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 850.9
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 830.1
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 820.8
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 799.3
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 796.0
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 770.4
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 730.1
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 726.5
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 724.1
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 714.4
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 694.6
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 690.6
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 678.2
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 669.4
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 667.7
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 638.7
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 636.5
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 613.4
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 551.2
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 533.1
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 523.4
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 500.4
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 459.0
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 386.4
Show allShow less

SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

405.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 405.9
FF:10181-103D1 60 years, female 422.4
FF:10159-103A6 76 years, female 389.5

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1075.6
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 928.7
Samples: 4

Max nTPM: 1103.6
Min nTPM: 818.2
Sample A Female 818.2
Sample B Female 1103.6
Sample C Male 942.9
Sample D Male 850.0
Ventral spinal cord
nTPM: 1075.6
Samples: 4

Max nTPM: 1286.2
Min nTPM: 890.1
Sample A Female 904.4
Sample B Female 1221.7
Sample C Male 890.1
Sample D Male 1286.2

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