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BRAIN MEDULLA OBLONGATA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Medulla oblongata
MEDULLA OBLONGATA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
HPA Brain:516.2 nTPM
FANTOM5:406.4 Scaled Tags Per Million
Pig:227.4 nTPM
Allen mouse:16.7 Expression energy

MEDULLA OBLONGATA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

516.2
Sample id Sample description nTPM
Area postrema
nTPM: 376.8
2799 Male, age 61, both hemispheres 423.8
2306 Male, age 80, both hemispheres 418.3
2054 Male, age 76, both hemispheres 288.1
Dorsal medullary reticular nucleus
nTPM: 309.6
2040 Female, age 85, both hemispheres 381.5
2373 Male, age 61, both hemispheres 288.9
2088 Male, age 76, both hemispheres 258.5
Dorsal motor vagal complex
nTPM: 297.0
2000 Male, age 74, unknown 362.0
2844 Male, age 55, unknown 354.7
2133 Female, age 91, both hemispheres 346.5
2185 Male, age 76, both hemispheres 311.0
2797 Male, age 61, both hemispheres 266.9
2813 Female, age 72, unknown 258.3
2643 Male, age 74, both hemispheres 244.1
2807 Female, age 85, both hemispheres 232.4
Gigantocellular reticular nuclei, medullary
nTPM: 322.3
2462 Male, age 74, both hemispheres 442.9
2314 Male, age 61, both hemispheres 359.0
2310 Male, age 80, both hemispheres 333.0
1876 Female, age 85, both hemispheres 305.3
2387 Female, age 91, both hemispheres 261.7
2022 Male, age 76, right hemisphere 231.7
Gigantocellular reticular nuclei, pars
nTPM: 309.0
2168 Male, age 76, both hemispheres 335.1
2336 Male, age 61, both hemispheres 331.3
2084 Female, age 85, both hemispheres 323.8
2330 Male, age 80, both hemispheres 281.8
2706 Male, age 80, both hemispheres 272.9
Inferior olive
nTPM: 353.5
2563 Male, age 74, both hemispheres 409.7
2178 Male, age 61, both hemispheres 398.4
2085 Female, age 85, both hemispheres 348.8
2379 Male, age 80, both hemispheres 310.3
2628 Female, age 91, both hemispheres 300.4
Lateral medullary reticular nucleus
nTPM: 429.4
2305 Male, age 74, both hemispheres 699.9
2852 Male, age 80, both hemispheres 490.0
2044 Male, age 76, both hemispheres 384.4
2190 Female, age 85, both hemispheres 342.1
2374 Male, age 61, both hemispheres 332.4
2804 Female, age 91, both hemispheres 327.5
Medial olivary nucleus
nTPM: 418.8
1943 Male, age 61, both hemispheres 531.4
1962 Male, age 76, both hemispheres 420.5
2851 Male, age 80, both hemispheres 376.5
2138 Female, age 91, both hemispheres 346.7
Medial vestibular nucleus
nTPM: 350.5
2134 Male, age 76, both hemispheres 416.2
2624 Male, age 61, both hemispheres 388.5
2801 Male, age 74, both hemispheres 380.8
2093 Male, age 80, both hemispheres 325.6
2803 Female, age 91, both hemispheres 299.5
2743 Female, age 85, both hemispheres 292.4
Motor hypoglossal nucleus
nTPM: 313.2
2182 Male, age 80, both hemispheres 375.3
2125 Female, age 91, both hemispheres 345.5
2132 Female, age 85, both hemispheres 304.9
2277 Male, age 76, both hemispheres 299.1
2461 Male, age 61, both hemispheres 241.0
Nucleus ambiguus
nTPM: 387.6
2071 Male, age 76, both hemispheres 396.0
2096 Female, age 85, both hemispheres 379.2
Nucleus cuneatus
nTPM: 332.1
2564 Male, age 74, both hemispheres 429.6
2380 Male, age 80, both hemispheres 398.2
2376 Male, age 61, both hemispheres 362.0
2808 Female, age 85, both hemispheres 354.1
2131 Male, age 76, both hemispheres 346.8
2100 Male, age 76, both hemispheres 327.2
2381 Male, age 80, both hemispheres 316.7
2562 Male, age 61, both hemispheres 287.0
2805 Female, age 91, both hemispheres 167.4
Nucleus gracilis
nTPM: 386.0
2627 Male, age 74, both hemispheres 473.3
2382 Male, age 80, both hemispheres 354.7
2299 Female, age 85, both hemispheres 329.9
Nucleus raphe obscurus
nTPM: 369.3
2142 Male, age 76, midline 409.7
2800 Male, age 61, midline 365.3
2845 Female, age 85, midline 332.8
Nucleus raphe pallidus
nTPM: 516.2
1924 Male, age 61, midline 734.3
2183 Male, age 80, midline 425.0
2145 Male, age 76, midline 389.3
Nucleus tractus solitarii
nTPM: 270.6
2307 Male, age 80, both hemispheres 301.8
2191 Female, age 85, both hemispheres 282.1
2656 Male, age 76, both hemispheres 276.5
2144 Female, age 91, right hemisphere 221.9
Parvicellular reticular nuclei
nTPM: 341.9
2119 Male, age 80, both hemispheres 397.5
2095 Male, age 76, both hemispheres 321.0
2558 Male, age 74, both hemispheres 307.1
Parvicellular reticular nuclei, medullary
nTPM: 313.1
2091 Female, age 85, both hemispheres 336.2
2189 Female, age 91, both hemispheres 328.8
2181 Male, age 80, left hemisphere 274.4
Peritrigeminal nucleus
nTPM: 405.4
2067 Female, age 85, both hemispheres 471.9
2179 Male, age 61, both hemispheres 380.1
2136 Male, age 76, both hemispheres 364.0
Prepositus hypoglossal nucleus
nTPM: 316.3
2855 Female, age 85, right hemisphere 328.2
2086 Male, age 80, both hemispheres 304.3
Spinal trigeminal nucleus, caudal
nTPM: 340.2
2390 Female, age 91, both hemispheres 378.0
2447 Male, age 76, both hemispheres 358.7
2308 Male, age 80, both hemispheres 341.9
2312 Male, age 61, both hemispheres 327.5
2642 Male, age 74, both hemispheres 294.8
Spinal trigeminal nucleus, interpolar
nTPM: 358.3
2625 Male, age 61, both hemispheres 468.2
2066 Male, age 76, right hemisphere 396.6
2033 Male, age 80, both hemispheres 364.9
2386 Female, age 85, both hemispheres 288.7
2389 Female, age 91, both hemispheres 273.0
Spinal vestibular nucleus
nTPM: 307.2
2796 Male, age 61, both hemispheres 348.3
2780 Male, age 80, both hemispheres 337.7
2186 Female, age 91, both hemispheres 314.7
2748 Male, age 76, both hemispheres 307.9
2806 Female, age 85, both hemispheres 276.2
2384 Male, age 74, both hemispheres 258.5
Superior vestibular nucleus
nTPM: 341.3
2015 Male, age 80, both hemispheres 348.5
2383 Male, age 74, both hemispheres 343.2
2061 Male, age 76, both hemispheres 332.2
Ventral medullary reticular nucleus
nTPM: 313.1
2372 Male, age 61, both hemispheres 323.6
2060 Male, age 76, both hemispheres 302.6
Ventrolateral medulla, A1-C1 cell groups
nTPM: 363.6
1986 Male, age 76, both hemispheres 381.4
2180 Male, age 61, both hemispheres 376.7
2118 Male, age 80, both hemispheres 369.4
2741 Female, age 85, both hemispheres 363.3
2302 Female, age 91, both hemispheres 327.1

MEDULLA OBLONGATA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

406.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Medulla oblongata
Scaled Tags Per Million: 406.4
FF:10174-103C3 60 years, female 431.0
FF:10155-103A2 76 years, female 415.6
FF:10038-101F2 18-64 years, mixed 372.5

MEDULLA OBLONGATA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

227.4
Pig sample Sample description nTPM
Medulla oblongata
nTPM: 227.4
Samples: 4

Max nTPM: 265.0
Min nTPM: 188.4
Sample A Female 188.4
Sample B Female 202.0
Sample C Male 254.0
Sample D Male 265.0

MEDULLA OBLONGATA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

16.7
Allen experiment id Experiment description Expression energy
Medulla oblongata
Expression energy: 16.7
69028479 Antisense, RP_050316_01_D05, Mouse strain C57BL/6J (56 days, male) 16.7

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