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RPS25
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TISSUE PRIMARY DATA SMALL INTESTINE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Small intestine
Tissue proteome
Intestine
SMALL INTESTINE - Expression summary
Protein expression
Small intestinei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glandular cells: High
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:752.0 nTPM
HPA:581.8 nTPM
GTEx:752.0 nTPM
FANTOM5:859.4 Scaled Tags Per Million

SMALL INTESTINE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA031801
Glandular cells High



SMALL INTESTINE - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Average nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

581.8
overview
Male, age 65
Small intestine sample 232
nTPM: 677.5
Cell types%
Glandular cells:
55

Smooth muscle cells:
5

Other cell types:
40

overview
Male, age 39
Small intestine sample 233
nTPM: 582.4
Cell types%
Glandular cells:
40

Smooth muscle cells:
5

Other cell types:
55

overview
Male, age 68
Small intestine sample 234
nTPM: 537.7
Cell types%
Glandular cells:
30

Smooth muscle cells:
15

Other cell types:
55

N/A
Male, age 85
Small intestine sample 235
nTPM: 529.5

SMALL INTESTINE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

752.0
GTEx sample id Sample description nTPM
Small Intestine - Terminal Ileum
Average nTPM: 752.0
Samples: 187

Max nTPM: 1891.1
Min nTPM: 368.1
Std nTPM: 252.3
Median nTPM: 712.7
GTEX-1EMGI-2826-SM-7IGMR 60-69 years, male 1891.1
GTEX-1MGNQ-2326-SM-EV7BG 40-49 years, male 1603.1
GTEX-1JJE9-2226-SM-CXZJM 70-79 years, male 1555.8
GTEX-11TUW-1926-SM-5BC58 60-69 years, male 1405.6
GTEX-1R9K4-2326-SM-E6CRB 60-69 years, male 1392.3
GTEX-1GMR3-2726-SM-7MKFB 40-49 years, male 1382.0
GTEX-1PIEJ-1526-SM-E6CP8 20-29 years, female 1374.4
GTEX-1RAZQ-2226-SM-DPRZR 30-39 years, male 1322.4
GTEX-148VJ-2226-SM-5NQ9M 70-79 years, male 1306.3
GTEX-1PDJ9-1826-SM-E9U66 20-29 years, male 1261.7
GTEX-1NSGN-2126-SM-DPRYN 50-59 years, male 1216.8
GTEX-1LH75-1926-SM-DIPGD 50-59 years, female 1194.0
GTEX-1CB4F-1826-SM-7MGXI 60-69 years, male 1191.1
GTEX-1QP28-1726-SM-E6CRK 50-59 years, female 1170.0
GTEX-1GL5R-2026-SM-7MKHP 50-59 years, male 1168.5
GTEX-1JMQK-2426-SM-CXZJU 60-69 years, male 1168.2
GTEX-183FY-1626-SM-793D8 20-29 years, male 1149.4
GTEX-11VI4-1626-SM-5EQKO 40-49 years, female 1134.4
GTEX-16A39-1426-SM-6LLI6 30-39 years, female 1116.7
GTEX-Y5V5-1826-SM-4VDS5 60-69 years, female 1108.9
GTEX-1OJC3-1626-SM-E9U65 20-29 years, male 1049.5
GTEX-WRHK-1026-SM-4MVOD 20-29 years, female 1031.0
GTEX-1399U-2126-SM-5IFEZ 50-59 years, female 1012.5
GTEX-14PK6-1626-SM-6871I 70-79 years, female 998.1
GTEX-1S5ZA-1326-SM-EV7BB 20-29 years, male 988.7
GTEX-1LGOU-1426-SM-D3L8N 20-29 years, female 956.9
GTEX-17MFQ-1026-SM-7KFSZ 20-29 years, male 955.2
GTEX-1RAZR-1826-SM-E6CRE 40-49 years, male 954.5
GTEX-13W3W-2026-SM-5K7UL 60-69 years, female 950.4
GTEX-16NGA-1126-SM-7KFSY 40-49 years, female 948.6
GTEX-1H11D-2526-SM-9JGGU 40-49 years, male 947.9
GTEX-11P82-0826-SM-5P9GU 20-29 years, male 939.8
GTEX-1BAJH-2526-SM-7IGOT 70-79 years, male 936.9
GTEX-VUSG-1726-SM-4KKZL 50-59 years, male 931.1
GTEX-18QFQ-1626-SM-72D7H 30-39 years, male 930.7
GTEX-1IKOE-1926-SM-ARU7V 30-39 years, female 919.8
GTEX-13FH7-1226-SM-5IJFK 50-59 years, female 910.8
GTEX-13NYB-1826-SM-5J1N3 40-49 years, male 902.8
GTEX-14C39-1826-SM-5ZZW4 40-49 years, male 894.6
GTEX-1H1DE-1426-SM-9JGHV 20-29 years, male 893.9
GTEX-UPK5-2026-SM-4JBIM 40-49 years, male 891.2
GTEX-1QPFJ-2626-SM-DPRZU 30-39 years, female 885.1
GTEX-1K9T9-2726-SM-D4P3E 50-59 years, female 882.8
GTEX-1192X-2526-SM-59868 50-59 years, male 877.5
GTEX-ZC5H-2326-SM-4WAYT 40-49 years, female 875.8
GTEX-Y5LM-1626-SM-4VDTB 40-49 years, female 872.9
GTEX-1RAZA-1826-SM-DTXA2 20-29 years, male 868.1
GTEX-1L5NE-1826-SM-EV79T 50-59 years, male 862.3
GTEX-117YX-0326-SM-5GICL 50-59 years, male 853.0
GTEX-1R9JW-1926-SM-EVR4J 30-39 years, female 852.9
GTEX-14XAO-1926-SM-6ETZO 60-69 years, female 849.2
GTEX-1B8KZ-1126-SM-7IGLX 50-59 years, male 847.5
GTEX-Y3IK-1726-SM-4YCCR 50-59 years, female 845.4
GTEX-Y3I4-1326-SM-4TT8Z 50-59 years, male 840.5
GTEX-14PKU-1626-SM-6871C 40-49 years, female 840.4
GTEX-11NSD-1726-SM-5N9C3 20-29 years, male 833.6
GTEX-X15G-1426-SM-4PQZK 50-59 years, female 827.9
GTEX-1OKEX-1126-SM-DTXEB 60-69 years, male 826.9
GTEX-WEY5-1526-SM-4LMJF 40-49 years, female 824.1
GTEX-1C475-1426-SM-793CH 40-49 years, female 818.7
GTEX-1QW4Y-1226-SM-EWRMY 30-39 years, male 804.4
GTEX-15EU6-1826-SM-7PC1W 50-59 years, male 803.9
GTEX-1I1GT-1826-SM-ARZLW 60-69 years, female 803.1
GTEX-13QBU-1926-SM-5IJEW 40-49 years, female 792.7
GTEX-145ME-0926-SM-5O9AR 40-49 years, female 792.4
GTEX-ZLFU-1526-SM-4WWBT 40-49 years, male 791.9
GTEX-1GMR2-1026-SM-7MKHJ 50-59 years, male 787.2
GTEX-12BJ1-1926-SM-5HL9Z 60-69 years, male 784.8
GTEX-131XE-0926-SM-5HL7J 50-59 years, male 784.2
GTEX-18A66-2526-SM-7KFTZ 60-69 years, male 780.4
GTEX-WH7G-1626-SM-4LVMY 40-49 years, male 778.1
GTEX-ZF29-1626-SM-4WKFJ 60-69 years, female 767.1
GTEX-13OVI-1926-SM-5IJCG 60-69 years, female 765.7
GTEX-11XUK-1426-SM-5EQMG 40-49 years, female 764.7
GTEX-15DZA-0826-SM-6AJBF 30-39 years, female 764.0
GTEX-17KNJ-1626-SM-718AL 50-59 years, male 764.0
GTEX-ZAB5-1526-SM-5HL9P 50-59 years, male 763.5
GTEX-1R9PM-1626-SM-DPRY9 20-29 years, male 762.7
GTEX-ZA64-1226-SM-5HL7B 20-29 years, male 759.1
GTEX-1QCLZ-2126-SM-EWRNC 60-69 years, female 745.2
GTEX-13RTK-0826-SM-5Q5C6 20-29 years, male 745.0
GTEX-XPVG-1726-SM-4B65W 50-59 years, male 744.9
GTEX-XMK1-1826-SM-4B66F 40-49 years, male 740.3
GTEX-14E6E-1626-SM-5RQI7 30-39 years, male 740.0
GTEX-14BMU-1426-SM-5TDE5 20-29 years, female 739.4
GTEX-13O61-1326-SM-5KM31 60-69 years, male 735.6
GTEX-12WSK-1526-SM-5CVNO 40-49 years, female 732.7
GTEX-ZG7Y-1926-SM-DNZZ5 50-59 years, male 727.3
GTEX-1KXAM-2026-SM-DHXKI 60-69 years, male 727.1
GTEX-WFJO-0926-SM-4LVM2 30-39 years, male 726.3
GTEX-1S82Z-1826-SM-E9TIK 30-39 years, female 724.3
GTEX-131XG-1726-SM-5LZUR 50-59 years, female 719.8
GTEX-11LCK-1926-SM-5A5KE 30-39 years, male 718.6
GTEX-1LBAC-1526-SM-CXZKU 20-29 years, male 712.7
GTEX-1CAMR-0826-SM-7MKFK 20-29 years, male 706.2
GTEX-139T6-1026-SM-5IJGC 50-59 years, male 705.7
GTEX-ZEX8-1826-SM-57WBH 50-59 years, male 698.2
GTEX-ZQUD-0926-SM-57WE3 30-39 years, male 695.6
GTEX-VJYA-0926-SM-4KL1N 60-69 years, male 695.1
GTEX-13111-1426-SM-5DUW3 50-59 years, male 694.3
GTEX-ZVP2-1726-SM-5GU5P 50-59 years, male 692.4
GTEX-ZTPG-2626-SM-57WFX 20-29 years, female 692.2
GTEX-1497J-1926-SM-5TDCC 60-69 years, male 679.4
GTEX-Z9EW-0926-SM-5CVMM 40-49 years, male 678.9
GTEX-1AX8Z-2526-SM-731E3 60-69 years, male 676.9
GTEX-1QP2A-2426-SM-EXOJA 50-59 years, male 676.0
GTEX-Y111-2226-SM-4SOJB 50-59 years, male 675.4
GTEX-1R7EV-1226-SM-DTX82 40-49 years, male 671.0
GTEX-ZPIC-2326-SM-57WDW 40-49 years, female 668.9
GTEX-X5EB-1626-SM-4E3IV 40-49 years, male 667.2
GTEX-1HSMQ-2226-SM-C1YRD 50-59 years, male 662.2
GTEX-WYJK-1526-SM-4ONCW 50-59 years, male 662.1
GTEX-1MUQO-2426-SM-EAZ5A 60-69 years, male 661.5
GTEX-1J8QM-1026-SM-C1YQA 60-69 years, female 657.7
GTEX-1F75I-2526-SM-9WPOZ 40-49 years, male 657.0
GTEX-ZF2S-1726-SM-57WFT 50-59 years, female 654.9
GTEX-YEC4-1726-SM-4W21E 40-49 years, male 652.0
GTEX-1JN76-1126-SM-C1YRL 20-29 years, female 651.7
GTEX-1C64O-2526-SM-79ONO 60-69 years, male 643.6
GTEX-13X6H-1826-SM-7EWCZ 50-59 years, female 643.0
GTEX-ZP4G-1626-SM-57WGD 20-29 years, female 629.5
GTEX-ZLWG-1626-SM-DNZZ1 50-59 years, female 612.2
GTEX-131XF-1326-SM-5GCMQ 60-69 years, male 610.4
GTEX-17HHE-1726-SM-79OKT 50-59 years, male 608.7
GTEX-ZZ64-0526-SM-5GZXM 20-29 years, male 606.5
GTEX-111CU-1326-SM-5NQ8L 50-59 years, male 601.7
GTEX-XGQ4-1326-SM-4GIDU 50-59 years, male 601.2
GTEX-1399R-2026-SM-5K7WN 30-39 years, male 599.8
GTEX-1B8KE-1726-SM-7IGMN 50-59 years, male 596.9
GTEX-139YR-2226-SM-5IFFW 50-59 years, male 593.7
GTEX-11DXZ-1326-SM-5H11X 50-59 years, male 591.3
GTEX-16AAH-1426-SM-7KFTR 50-59 years, male 589.7
GTEX-ZYFG-2026-SM-5E43Y 60-69 years, female 589.5
GTEX-13113-1226-SM-5EGHT 60-69 years, female 587.8
GTEX-11I78-1126-SM-5A5K5 50-59 years, female 580.3
GTEX-ZQG8-2526-SM-57WEQ 60-69 years, female 576.3
GTEX-14DAR-1426-SM-5RQIR 50-59 years, male 573.8
GTEX-1JK1U-1226-SM-CNNPN 60-69 years, male 573.7
GTEX-15G1A-1726-SM-6LPI4 30-39 years, male 570.5
GTEX-1R9K5-2026-SM-E6CPS 50-59 years, male 567.2
GTEX-WFON-1526-SM-4LVMP 40-49 years, male 566.8
GTEX-ZVT2-2126-SM-5NQ93 50-59 years, female 563.5
GTEX-13CF3-1226-SM-5LZXN 60-69 years, female 561.4
GTEX-14PJN-0826-SM-686ZL 30-39 years, male 560.3
GTEX-14PJ3-1326-SM-664O7 50-59 years, male 556.7
GTEX-ZXES-1526-SM-5NQ95 30-39 years, female 556.2
GTEX-145LT-1026-SM-5LU9O 40-49 years, male 550.1
GTEX-1CAMS-2426-SM-7DHMV 40-49 years, female 549.3
GTEX-144GM-1026-SM-79OKU 20-29 years, male 545.9
GTEX-XXEK-1026-SM-4BRUW 50-59 years, male 544.4
GTEX-14PKV-2026-SM-6AJ9A 20-29 years, female 541.7
GTEX-1399S-2026-SM-5KM4B 30-39 years, female 541.5
GTEX-WFG7-1726-SM-4LVME 20-29 years, male 539.6
GTEX-11DXX-1626-SM-5H11H 60-69 years, female 539.3
GTEX-1R7EU-1326-SM-E6CQ6 60-69 years, male 529.2
GTEX-13PL7-2626-SM-5IFH4 60-69 years, female 528.5
GTEX-13D11-0726-SM-5LZZB 50-59 years, female 527.4
GTEX-11P7K-1626-SM-5GU63 30-39 years, male 524.9
GTEX-XBED-1426-SM-4AT4G 60-69 years, male 513.7
GTEX-13O21-1026-SM-5IJDU 50-59 years, male 513.2
GTEX-11EQ9-1326-SM-5985X 30-39 years, male 510.6
GTEX-ZTX8-0526-SM-59HLD 20-29 years, male 506.6
GTEX-16MTA-1526-SM-6LPJB 50-59 years, male 506.0
GTEX-XUZC-1426-SM-4BRV3 30-39 years, female 501.3
GTEX-WFG8-1626-SM-4LVMB 20-29 years, male 497.4
GTEX-Y9LG-1626-SM-5IFHM 30-39 years, male 496.0
GTEX-Y114-1426-SM-4TT6W 50-59 years, female 493.8
GTEX-YB5E-1526-SM-5IFIE 40-49 years, male 492.2
GTEX-1AMFI-1926-SM-731F2 50-59 years, female 491.8
GTEX-133LE-1426-SM-5IFH1 20-29 years, female 488.4
GTEX-XAJ8-0526-SM-47JYK 40-49 years, male 485.0
GTEX-14PN3-2026-SM-68729 60-69 years, female 484.9
GTEX-YF7O-1826-SM-5IFIU 50-59 years, male 477.5
GTEX-13FTW-2026-SM-5IJE2 40-49 years, male 464.7
GTEX-ZPCL-1726-SM-57WEO 60-69 years, female 458.7
GTEX-YFCO-1326-SM-664NV 40-49 years, male 450.4
GTEX-14PJ6-1726-SM-6AJBN 60-69 years, female 448.8
GTEX-1122O-1326-SM-5H11F 60-69 years, female 439.4
GTEX-ZVZP-1826-SM-5GZXB 50-59 years, male 438.8
GTEX-WY7C-1826-SM-4ONCE 50-59 years, male 425.4
GTEX-ZLV1-1126-SM-4WWBW 60-69 years, female 424.9
GTEX-111YS-1426-SM-5GID8 60-69 years, male 418.1
GTEX-WQUQ-2426-SM-4MVNW 60-69 years, male 405.8
GTEX-WHSB-1026-SM-4M1XN 50-59 years, male 393.4
GTEX-1J8Q3-2526-SM-CNNQ4 60-69 years, male 392.4
GTEX-ZDTT-1726-SM-5HL69 60-69 years, male 392.2
GTEX-ZTSS-0926-SM-59865 40-49 years, male 368.1
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SMALL INTESTINE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

859.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Small intestine
Scaled Tags Per Million: 859.4
FF:10024-101D6 15,40,85 years, mixed 859.4

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