We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
HMGN3
HPA
RESOURCES
  • TISSUE
  • BRAIN
  • SINGLE CELL
  • SUBCELLULAR
  • CANCER
  • BLOOD
  • CELL LINE
  • STRUCTURE & INTERACTION
ABOUT
  • INTRODUCTION
  • HISTORY
  • ORGANIZATION
  • PUBLICATIONS
  • ANTIBODY SUBMISSION
  • ANTIBODY AVAILABILITY
  • ACKNOWLEDGMENTS
  • CONTACT
NEWS
  • NEWS ARTICLES
  • PRESS ROOM
LEARN
  • DICTIONARY
  • PROTEIN CLASSES
  • PROTEIN EVIDENCE
  • METHODS
  • EDUCATIONAL VIDEOS
DATA
  • DOWNLOADABLE DATA
  • PUBLICATION DATA
  • RELEASE HISTORY
HELP
  • ANTIBODY VALIDATION
  • ASSAYS & ANNOTATION
  • DISCLAIMER
  • HELP & FAQ
  • PRIVACY STATEMENT
  • LICENCE & CITATION
Fields »
Search result

Field
Term
Gene name
Class
Subclass
Class
Keyword
Chromosome
External id
Tissue
Cell type
Expression
Antibody panel
Tissue
Main location
Patient ID
Annotation
Tissue
Category
Tau score
Cluster
Reliability
Brain region
Category
Tau score
Brain region
Category
Tau score
Brain region
Category
Tau score
Cluster
Reliability
Tissue
Cell type
Enrichment
Cell type
Category
Tau score
Cell type
Category
Tau score
Cell type
Category
Tau score
Cell lineage
Category
Tau score
Cluster
Cluster
Location
Searches
Location
Cell line
Class
Type
Phase
Reliability
Cancer
Prognosis
Cancer
Category
Cancer
Category
Tau score
Cluster
Variants
Interacting gene (ensg_id)
Type
Number of interactions
Pathway
Category
Score
Score
Score
Validation
Validation
Validation
Validation
Antibodies
Data type
Column


  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • SUBCELL

  • CANCER

  • BLOOD

  • CELL LINE

  • STRUCT & INT

  • HMGN3
BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:128.0 nTPM
HPA Brain:71.0 nTPM
GTEx:128.0 nTPM
FANTOM5:198.1 Scaled Tags Per Million
Pig:45.5 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

71.0
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 71.0
2048 Male, age 55, midline 86.3
2816 Male, age 47, midline 73.1
1981 Female, age 72, midline 72.7
2194 Female, age 79, both hemispheres 64.6
2565 Male, age 75, midline 58.3
Cervical spinal cord, dorsal horn
nTPM: 70.5
2296 Male, age 66, both hemispheres 94.1
2173 Female, age 72, unknown 69.6
1877 Male, age 55, unknown 68.7
2069 Male, age 47, both hemispheres 67.5
2721 Male, age 90, both hemispheres 66.3
2297 Male, age 75, both hemispheres 57.0
Cervical spinal cord, ventral horn
nTPM: 58.3
2098 Female, age 72, unknown 73.5
2820 Female, age 79, both hemispheres 64.3
2068 Male, age 55, unknown 55.8
2295 Male, age 66, both hemispheres 54.5
2809 Male, age 90, both hemispheres 52.8
2480 Male, age 75, both hemispheres 48.8

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

128.0
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 128.0
Samples: 159

Max nTPM: 214.6
Min nTPM: 70.2
Std nTPM: 27.0
Median nTPM: 125.7
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 214.6
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 210.0
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 201.5
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 193.7
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 189.2
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 187.3
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 185.1
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 183.7
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 177.1
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 169.8
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 168.7
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 167.1
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 165.7
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 165.2
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 165.1
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 163.9
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 163.2
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 162.1
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 160.7
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 158.1
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 156.7
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 154.2
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 153.9
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 153.1
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 151.3
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 150.1
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 150.0
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 149.8
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 149.7
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 149.1
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 148.1
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 148.1
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 147.4
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 147.4
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 147.3
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 147.2
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 146.4
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 146.0
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 145.8
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 145.8
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 145.0
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 144.3
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 144.3
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 144.1
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 144.0
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 142.7
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 142.3
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 142.1
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 140.6
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 138.0
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 137.3
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 137.1
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 136.9
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 136.7
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 136.5
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 136.5
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 136.3
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 135.4
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 135.4
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 134.1
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 133.4
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 133.3
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 133.2
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 132.2
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 131.8
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 130.3
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 130.2
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 129.8
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 128.0
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 127.9
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 127.8
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 127.5
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 127.5
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 127.3
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 126.9
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 126.9
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 126.6
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 126.5
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 125.8
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 125.7
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 125.6
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 125.3
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 125.1
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 124.2
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 124.1
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 123.9
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 123.2
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 122.9
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 122.4
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 121.7
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 120.7
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 120.6
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 120.6
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 120.0
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 119.8
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 119.7
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 119.6
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 119.4
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 119.1
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 118.6
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 117.6
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 117.3
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 116.9
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 116.8
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 116.8
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 116.4
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 116.3
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 116.0
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 115.9
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 113.9
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 113.4
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 112.8
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 112.8
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 112.6
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 112.6
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 111.6
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 110.0
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 109.3
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 109.1
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 109.0
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 108.1
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 107.3
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 107.1
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 106.9
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 106.4
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 105.5
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 105.2
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 105.0
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 104.9
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 104.3
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 103.2
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 103.2
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 102.9
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 100.9
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 100.7
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 100.6
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 100.1
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 98.9
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 98.8
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 98.2
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 98.2
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 98.1
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 95.7
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 95.1
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 93.8
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 92.2
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 91.3
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 89.8
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 88.9
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 88.4
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 88.3
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 87.0
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 86.6
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 84.9
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 83.4
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 80.4
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 78.5
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 74.3
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 70.2
Show allShow less

SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

198.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 198.1
FF:10159-103A6 76 years, female 209.6
FF:10181-103D1 60 years, female 186.6

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

45.5
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 45.5
Samples: 4

Max nTPM: 64.7
Min nTPM: 35.0
Sample A Female 35.7
Sample B Female 46.6
Sample C Male 64.7
Sample D Male 35.0
Ventral spinal cord
nTPM: 39.6
Samples: 4

Max nTPM: 42.1
Min nTPM: 37.8
Sample A Female 38.6
Sample B Female 37.8
Sample C Male 42.1
Sample D Male 40.0

Contact

  • NEWS ARTICLES
  • PRESS ROOM

The Project

  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS

The Human Protein Atlas

  • DOWNLOADABLE DATA
  • LICENCE & CITATION
  • HELP & FAQ
The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.


contact@proteinatlas.org