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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:150.2 nTPM
HPA Brain:101.7 nTPM
GTEx:150.2 nTPM
FANTOM5:141.2 Scaled Tags Per Million
Pig:52.7 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

101.7
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 85.5
1981 Female, age 72, midline 102.5
2565 Male, age 75, midline 87.3
2194 Female, age 79, both hemispheres 86.7
2048 Male, age 55, midline 83.4
2816 Male, age 47, midline 67.5
Cervical spinal cord, dorsal horn
nTPM: 96.0
2173 Female, age 72, unknown 118.3
2069 Male, age 47, both hemispheres 107.1
2296 Male, age 66, both hemispheres 97.4
2297 Male, age 75, both hemispheres 97.4
1877 Male, age 55, unknown 80.9
2721 Male, age 90, both hemispheres 74.8
Cervical spinal cord, ventral horn
nTPM: 101.7
2809 Male, age 90, both hemispheres 129.1
2480 Male, age 75, both hemispheres 123.9
2098 Female, age 72, unknown 117.8
2295 Male, age 66, both hemispheres 90.5
2068 Male, age 55, unknown 79.8
2820 Female, age 79, both hemispheres 68.9

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

150.2
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 150.2
Samples: 159

Max nTPM: 251.7
Min nTPM: 83.9
Std nTPM: 30.8
Median nTPM: 143.6
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 251.7
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 246.4
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 232.4
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 230.4
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 228.7
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 225.5
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 214.6
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 211.0
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 204.7
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 202.7
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 202.6
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 201.1
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 200.6
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 196.1
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 195.3
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 194.5
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 194.3
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 194.1
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 189.9
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 188.1
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 186.5
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 185.3
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 182.9
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 182.5
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 179.4
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 179.4
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 178.9
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 178.5
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 178.3
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 177.4
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 176.7
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 174.2
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 173.9
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 173.5
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 168.8
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 168.6
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 168.3
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 167.6
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 167.4
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 165.7
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 165.5
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 165.1
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 164.6
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 163.6
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 163.4
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 163.3
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 161.0
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 160.9
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 159.7
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 159.2
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 159.2
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 158.8
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 156.8
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 156.6
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 156.0
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 155.4
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 155.4
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 155.4
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 155.3
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 155.0
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 153.9
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 153.2
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 152.2
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 152.0
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 151.5
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 151.1
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 150.9
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 150.8
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 150.6
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 150.4
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 149.5
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 148.5
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 147.6
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 147.1
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 146.9
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 146.3
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 146.3
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 145.8
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 143.9
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 143.6
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 143.2
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 142.9
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 142.9
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 142.8
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 141.2
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 141.2
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 140.5
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 140.5
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 140.3
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 140.3
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 139.8
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 139.6
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 139.3
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 139.3
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 138.4
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 138.1
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 137.9
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 137.9
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 137.6
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 137.3
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 137.1
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 136.9
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 136.5
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 136.3
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 135.4
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 134.9
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 134.5
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 134.3
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 134.3
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 133.8
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 133.3
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 132.7
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 131.8
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 131.7
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 130.8
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 130.2
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 129.4
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 129.0
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 129.0
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 129.0
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 128.9
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 128.8
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 128.5
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 128.4
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 126.8
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 126.6
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 126.5
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 126.3
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 124.3
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 123.7
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 122.6
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 122.1
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 121.3
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 120.8
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 120.3
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 119.3
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 119.1
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 118.2
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 117.6
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 116.3
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 115.9
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 114.3
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 114.3
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 113.4
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 113.0
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 112.5
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 112.3
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 111.5
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 111.2
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 110.3
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 109.1
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 109.0
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 108.5
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 106.5
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 106.3
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 105.1
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 104.8
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 101.9
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 83.9
Show allShow less

SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

141.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 141.2
FF:10181-103D1 60 years, female 178.0
FF:10159-103A6 76 years, female 104.4

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

52.7
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 52.7
Samples: 4

Max nTPM: 60.1
Min nTPM: 48.5
Sample A Female 51.6
Sample B Female 48.5
Sample C Male 60.1
Sample D Male 50.6
Ventral spinal cord
nTPM: 49.5
Samples: 4

Max nTPM: 50.6
Min nTPM: 48.5
Sample A Female 50.0
Sample B Female 48.5
Sample C Male 50.6
Sample D Male 48.9

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