We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
CCNI
HPA
RESOURCES
  • TISSUE
  • BRAIN
  • SINGLE CELL
  • SUBCELLULAR
  • CANCER
  • BLOOD
  • CELL LINE
  • STRUCTURE & INTERACTION
ABOUT
  • INTRODUCTION
  • HISTORY
  • ORGANIZATION
  • PUBLICATIONS
  • ANTIBODY SUBMISSION
  • ANTIBODY AVAILABILITY
  • ACKNOWLEDGMENTS
  • CONTACT
NEWS
  • NEWS ARTICLES
  • PRESS ROOM
LEARN
  • DICTIONARY
  • PROTEIN CLASSES
  • PROTEIN EVIDENCE
  • METHODS
  • EDUCATIONAL VIDEOS
DATA
  • DOWNLOADABLE DATA
  • PUBLICATION DATA
  • RELEASE HISTORY
HELP
  • ANTIBODY VALIDATION
  • ASSAYS & ANNOTATION
  • DISCLAIMER
  • HELP & FAQ
  • PRIVACY STATEMENT
  • LICENCE & CITATION
Fields »
Search result

Field
Term
Gene name
Class
Subclass
Class
Keyword
Chromosome
External id
Tissue
Cell type
Expression
Antibody panel
Tissue
Main location
Patient ID
Annotation
Tissue
Category
Tau score
Cluster
Reliability
Brain region
Category
Tau score
Brain region
Category
Tau score
Brain region
Category
Tau score
Cluster
Reliability
Tissue
Cell type
Enrichment
Cell type
Category
Tau score
Cell type
Category
Tau score
Cell type
Category
Tau score
Cell lineage
Category
Tau score
Cluster
Cluster
Location
Searches
Location
Cell line
Class
Type
Phase
Reliability
Cancer
Prognosis
Cancer
Category
Cancer
Category
Tau score
Cluster
Variants
Interacting gene (ensg_id)
Type
Number of interactions
Pathway
Category
Score
Score
Score
Validation
Validation
Validation
Validation
Antibodies
Data type
Column


  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • SUBCELL

  • CANCER

  • BLOOD

  • CELL LINE

  • STRUCT & INT

  • CCNI
BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:150.0 nTPM
HPA Brain:317.6 nTPM
GTEx:150.0 nTPM
FANTOM5:594.3 Scaled Tags Per Million
Pig:323.8 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

317.6
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 279.4
2565 Male, age 75, midline 323.5
2194 Female, age 79, both hemispheres 295.9
2048 Male, age 55, midline 283.0
1981 Female, age 72, midline 254.8
2816 Male, age 47, midline 239.6
Cervical spinal cord, dorsal horn
nTPM: 237.8
2069 Male, age 47, both hemispheres 265.4
2173 Female, age 72, unknown 264.4
2296 Male, age 66, both hemispheres 256.4
2297 Male, age 75, both hemispheres 231.5
1877 Male, age 55, unknown 209.8
2721 Male, age 90, both hemispheres 199.2
Cervical spinal cord, ventral horn
nTPM: 317.6
2480 Male, age 75, both hemispheres 435.0
2809 Male, age 90, both hemispheres 339.1
2295 Male, age 66, both hemispheres 336.0
2068 Male, age 55, unknown 285.9
2820 Female, age 79, both hemispheres 261.3
2098 Female, age 72, unknown 248.6

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

150.0
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 150.0
Samples: 159

Max nTPM: 332.7
Min nTPM: 94.8
Std nTPM: 36.2
Median nTPM: 142.7
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 332.7
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 327.0
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 236.3
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 236.2
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 228.3
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 226.3
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 219.6
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 212.3
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 209.3
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 202.7
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 199.9
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 197.8
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 196.3
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 195.7
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 194.8
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 194.3
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 191.3
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 189.4
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 188.5
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 188.3
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 187.3
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 187.0
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 186.1
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 183.3
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 180.8
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 180.0
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 179.4
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 179.3
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 176.0
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 175.7
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 175.3
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 174.6
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 174.1
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 173.6
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 173.5
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 173.5
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 172.3
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 171.4
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 171.2
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 170.2
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 169.2
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 168.8
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 166.4
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 166.0
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 163.3
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 162.7
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 161.7
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 161.3
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 161.2
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 160.1
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 159.7
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 159.4
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 158.3
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 158.1
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 157.6
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 157.1
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 156.2
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 155.1
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 155.0
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 154.8
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 152.4
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 151.9
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 151.5
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 151.4
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 151.1
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 150.3
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 150.1
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 149.5
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 148.8
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 148.6
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 148.4
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 147.7
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 147.3
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 146.6
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 146.5
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 146.4
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 145.9
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 144.5
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 143.6
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 142.7
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 141.9
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 141.7
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 140.8
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 140.6
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 140.1
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 138.9
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 138.1
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 137.4
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 137.1
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 137.0
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 136.5
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 134.6
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 134.2
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 133.8
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 133.3
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 133.1
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 133.1
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 132.9
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 132.5
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 131.9
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 131.9
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 131.7
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 131.2
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 131.1
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 129.3
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 129.0
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 128.9
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 128.4
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 128.4
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 128.4
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 128.4
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 128.4
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 128.2
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 128.0
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 128.0
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 127.8
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 127.5
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 127.2
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 126.9
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 126.6
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 126.3
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 126.2
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 125.6
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 125.6
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 125.0
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 124.0
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 123.1
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 122.7
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 122.1
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 122.0
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 121.9
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 121.3
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 119.8
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 119.6
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 116.6
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 116.6
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 116.5
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 116.3
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 115.9
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 115.0
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 114.7
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 114.4
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 113.0
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 112.3
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 112.2
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 111.7
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 110.8
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 110.1
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 109.7
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 107.9
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 106.6
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 105.9
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 105.3
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 104.7
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 103.0
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 102.6
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 102.2
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 99.1
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 94.8
Show allShow less

SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

594.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 594.3
FF:10181-103D1 60 years, female 763.6
FF:10159-103A6 76 years, female 425.1

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

323.8
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 302.0
Samples: 4

Max nTPM: 322.1
Min nTPM: 282.1
Sample A Female 311.5
Sample B Female 292.1
Sample C Male 282.1
Sample D Male 322.1
Ventral spinal cord
nTPM: 323.8
Samples: 4

Max nTPM: 373.6
Min nTPM: 301.6
Sample A Female 316.9
Sample B Female 301.6
Sample C Male 303.0
Sample D Male 373.6

Contact

  • NEWS ARTICLES
  • PRESS ROOM

The Project

  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS

The Human Protein Atlas

  • DOWNLOADABLE DATA
  • LICENCE & CITATION
  • HELP & FAQ
The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.


contact@proteinatlas.org