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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:133.5 nTPM
HPA Brain:203.4 nTPM
GTEx:133.5 nTPM
FANTOM5:86.7 Scaled Tags Per Million
Pig:64.6 nTPM
Mouse:140.7 nTPM
Allen mouse:13.4 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

203.4
Sample id Sample description nTPM
Amygdala
nTPM: 169.3
2814 Male, age 76, right hemisphere 206.5
2695 Female, age 67, right hemisphere 174.1
2517 Female, age 94, left hemisphere 170.9
1987 Female, age 91, left hemisphere 159.8
2514 Male, age 75, right hemisphere 135.0
Basal amygdala
nTPM: 197.9
2827 Female, age 67, right hemisphere 224.0
2685 Female, age 94, left hemisphere 219.1
2609 Male, age 75, right hemisphere 193.4
2243 Female, age 91, right hemisphere 186.1
1955 Male, age 76, both hemispheres 184.7
2110 Male, age 80, left hemisphere 179.8
Central amygdala
nTPM: 203.4
2826 Female, age 94, left hemisphere 269.2
2515 Male, age 75, right hemisphere 210.0
1905 Male, age 76, both hemispheres 203.6
2239 Male, age 80, left hemisphere 169.9
2701 Female, age 91, right hemisphere 164.3
Corticomedial amygdala
nTPM: 172.8
2829 Male, age 80, left hemisphere 201.9
2428 Male, age 75, right hemisphere 178.8
2535 Female, age 67, right hemisphere 175.8
2242 Female, age 91, right hemisphere 173.1
2429 Female, age 94, left hemisphere 156.2
2240 Male, age 76, both hemispheres 151.2
Lateral amygdala
nTPM: 191.9
2534 Female, age 94, left hemisphere 224.4
2830 Female, age 67, right hemisphere 216.2
1883 Male, age 76, both hemispheres 194.4
2256 Male, age 80, left hemisphere 179.7
2255 Female, age 91, right hemisphere 168.8
2516 Male, age 75, right hemisphere 168.1

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

133.5
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 133.5
Samples: 152

Max nTPM: 318.3
Min nTPM: 57.0
Std nTPM: 33.9
Median nTPM: 131.8
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 318.3
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 249.2
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 218.2
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 208.2
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 202.0
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 193.9
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 187.4
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 185.4
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 184.9
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 184.2
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 183.2
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 183.0
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 182.1
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 182.0
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 178.0
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 174.7
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 169.7
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 168.5
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 164.9
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 160.6
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 160.4
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 160.0
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 159.6
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 159.3
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 158.5
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 157.7
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 157.3
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 156.2
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 155.1
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 154.6
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 153.7
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 153.6
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 152.9
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 152.2
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 151.5
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 149.7
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 149.2
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 149.0
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 148.7
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 148.1
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 147.8
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 146.1
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 145.6
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 145.4
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 144.7
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 144.6
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 144.5
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 144.5
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 144.4
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 144.2
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 143.9
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 142.6
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 142.0
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 141.9
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 141.3
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 141.2
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 140.6
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 140.1
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 139.6
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 138.9
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 138.0
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 136.3
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 135.9
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 135.4
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 135.2
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 134.4
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 134.4
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 134.1
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 133.5
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 133.4
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 133.1
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 132.9
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 132.7
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 132.0
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 132.0
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 131.9
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 131.8
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 131.4
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 130.8
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 130.3
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 130.1
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 129.9
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 129.5
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 129.2
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 128.5
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 128.0
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 127.7
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 127.4
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 126.7
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 126.0
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 125.9
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 125.6
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 125.5
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 125.0
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 124.7
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 124.1
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 124.0
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 123.8
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 123.1
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 122.9
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 121.8
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 120.4
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 120.0
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 119.8
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 118.5
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 117.1
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 116.1
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 115.7
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 115.4
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 113.5
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 113.1
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 113.1
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 112.8
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 112.7
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 112.6
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 112.0
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 111.9
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 110.9
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 110.2
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 110.0
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 110.0
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 109.3
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 107.6
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 106.5
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 105.7
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 105.3
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 103.8
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 102.9
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 102.6
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 102.6
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 101.4
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 101.3
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 101.2
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 96.9
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 96.7
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 95.6
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 94.5
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 91.9
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 91.7
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 91.0
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 89.0
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 88.6
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 87.6
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 85.6
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 85.1
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 83.4
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 79.1
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 75.0
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 74.8
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 74.0
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 66.2
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 57.0
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

86.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 86.7
FF:10151-102I7 76 years, female 86.7

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

64.6
Pig sample Sample description nTPM
Amygdala
nTPM: 64.6
Samples: 4

Max nTPM: 85.8
Min nTPM: 52.3
Sample A Female 85.8
Sample B Female 52.3
Sample C Male 60.6
Sample D Male 59.5

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

140.7
Mouse sample Sample description nTPM
Amygdala
nTPM: 140.7
Samples: 4

Max nTPM: 153.2
Min nTPM: 129.4
Sample A Male 139.4
Sample B Male 140.8
Sample C Female 153.2
Sample D Female 129.4

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

13.4
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 13.4
68668048 Antisense, RP_050203_01_C11, Mouse strain C57BL/6J (56 days, male) 13.4

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