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TISSUE PRIMARY DATA HIPPOCAMPUS Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Hippocampus
Tissue proteome
HIPPOCAMPUS - Expression summary
Protein expression
Hippocampusi

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Not detected
Neuronal cells: Not detected
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
HPA Brain:77.1 nTPM
GTEx:93.1 nTPM
FANTOM5:88.9 Scaled Tags Per Million

HIPPOCAMPUS - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA000835Antibody CAB032888
Glial cells Not detectedNot detected
Neuronal cells Not detectedNot detected



HIPPOCAMPUS - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

77.1
Sample id Sample description nTPM
Hippocampus
nTPM: 77.1
1855 Male, age 76, left hemisphere 95.3
1898 Male, age 80, left hemisphere 87.3
2621 Female, age 67, right hemisphere 81.5
1911 Female, age 85, right hemisphere 70.3
2529 Female, age 94, left hemisphere 67.3
2148 Female, age 91, left hemisphere 60.7

HIPPOCAMPUS - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

93.1
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 93.1
Samples: 197

Max nTPM: 226.0
Min nTPM: 36.5
Std nTPM: 30.2
Median nTPM: 89.5
GTEX-13OW5-0011-R1b-SM-5L3GE 60-69 years, male 226.0
GTEX-PWO3-0011-R1A-SM-2I5EW 60-69 years, female 181.6
GTEX-18A6Q-0011-R1b-SM-731DI 60-69 years, male 181.1
GTEX-1GZHY-0011-R1a-SM-CE6RR 50-59 years, female 177.8
GTEX-13NYS-0011-R1b-SM-5MR55 60-69 years, male 157.0
GTEX-1H3O1-0011-R1b-SM-CL554 60-69 years, male 156.3
GTEX-17EVQ-0011-R1a-SM-7189S 70-79 years, male 155.7
GTEX-11ZTS-0011-R1a-SM-5BC71 60-69 years, female 152.1
GTEX-13QIC-0011-R1a-SM-5O9CJ 60-69 years, female 146.9
GTEX-183WM-0011-R1a-SM-718A8 70-79 years, female 145.8
GTEX-NPJ8-0011-R1a-SM-33HCB 40-49 years, male 140.2
GTEX-1H4P4-0011-R1b-SM-CL54V 50-59 years, male 139.6
GTEX-UTHO-0011-R1A-SM-3GIJO 60-69 years, male 138.7
GTEX-QVUS-0011-R1A-SM-3GAD2 60-69 years, female 138.2
GTEX-13RTJ-0011-R1a-SM-5O9D9 60-69 years, male 136.7
GTEX-132Q8-0011-R1a-SM-5EGLK 60-69 years, male 136.1
GTEX-13QJC-0011-R1b-SM-5S2UU 60-69 years, female 135.7
GTEX-1BAJH-0011-R1a-SM-7P8SV 70-79 years, male 135.4
GTEX-OHPN-0011-R1A-SM-2I5GB 60-69 years, female 135.3
GTEX-1C6VQ-0011-R1a-SM-7P8Q2 50-59 years, male 135.3
GTEX-1B933-0011-R1b-SM-9QEGW 50-59 years, female 133.5
GTEX-1CB4J-0011-R1a-SM-9WG64 60-69 years, male 132.7
GTEX-1399T-0011-R1b-SM-5DUWN 60-69 years, male 132.1
GTEX-14E7W-0011-R1b-SM-5YYAT 70-79 years, male 130.2
GTEX-13OVL-0011-R1a-SM-5L3H5 50-59 years, male 129.3
GTEX-11ZVC-0011-R1b-SM-5BC6M 50-59 years, female 124.8
GTEX-145LU-0011-R1a-SM-5Q5CE 50-59 years, male 124.5
GTEX-1B996-0011-R1b-SM-7P8PO 60-69 years, male 124.4
GTEX-14PN4-0011-R1b-SM-69LP8 50-59 years, male 124.1
GTEX-N7MT-0011-R1a-SM-CNPO1 60-69 years, female 123.9
GTEX-13NZA-0011-R1b-SM-5LUAF 60-69 years, male 123.1
GTEX-1GN1U-0011-R1a-SM-CJI25 50-59 years, female 123.0
GTEX-13OVJ-0011-R1b-SM-5L3I6 50-59 years, female 122.3
GTEX-14PQA-0011-R1b-SM-6EU1G 50-59 years, female 120.4
GTEX-1HR98-0011-R1a-SM-ARZLQ 60-69 years, male 119.7
GTEX-1LB8K-0011-R1b-SM-EZ6MV 50-59 years, male 119.7
GTEX-16NPV-0011-R1b-SM-7MGVZ 50-59 years, female 118.3
GTEX-17EVP-0011-R1a-SM-7DHLA 40-49 years, male 118.1
GTEX-14LLW-0011-R1a-SM-5ZZVD 70-79 years, female 117.8
GTEX-17HHY-0011-R1a-SM-7189V 50-59 years, male 117.3
GTEX-13OW8-0011-R1a-SM-5L3HI 60-69 years, male 116.8
GTEX-XMD1-0011-R1A-SM-4AT4C 60-69 years, male 116.1
GTEX-1EH9U-0011-R1b-SM-CJI2B 60-69 years, male 115.7
GTEX-13JVG-0011-R1a-SM-5KM32 60-69 years, male 114.7
GTEX-QMR6-0011-R1A-SM-32PKW 50-59 years, male 113.9
GTEX-14LZ3-0011-R1a-SM-69LP5 60-69 years, female 112.9
GTEX-13RTL-0011-R1a-SM-5PNZ8 40-49 years, male 111.6
GTEX-13S7M-0011-R1b-SM-5PNZE 60-69 years, female 110.4
GTEX-1I1GV-0011-R1a-SM-CL559 60-69 years, male 109.4
GTEX-145LS-0011-R1b-SM-5PNUP 60-69 years, female 108.8
GTEX-1H1DG-0011-R1b-SM-CKZP1 70-79 years, male 108.6
GTEX-11TUW-0011-R1a-SM-DO92S 60-69 years, male 108.5
GTEX-1E2YA-0011-R1b-SM-CJI29 50-59 years, male 108.2
GTEX-15CHQ-0011-R1a-SM-COH27 60-69 years, male 108.1
GTEX-12WSH-0011-R1a-SM-5GU5V 50-59 years, male 107.9
GTEX-17HII-0011-R1b-SM-7MGVW 50-59 years, male 107.9
GTEX-12ZZX-0011-R1a-SM-5EQ6B 40-49 years, female 107.7
GTEX-16XZZ-0011-R1a-SM-7LTAH 60-69 years, male 107.4
GTEX-1H3VE-0011-R1a-SM-A9G1K 40-49 years, male 107.3
GTEX-X4XX-0011-R1B-SM-3P622 60-69 years, male 106.0
GTEX-13G51-0011-R1a-SM-5LZYR 60-69 years, male 105.5
GTEX-X4EP-0011-R1A-SM-3P624 60-69 years, female 105.5
GTEX-1GMR8-0011-R1b-SM-CJI2O 50-59 years, female 105.4
GTEX-1EKGG-0011-R1b-SM-9QEI1 60-69 years, male 105.3
GTEX-1I1GS-0011-R1a-SM-CJI43 60-69 years, male 105.2
GTEX-11GSO-0011-R1b-SM-57WD3 60-69 years, male 104.8
GTEX-1E1VI-0011-R1a-SM-ARZMM 50-59 years, male 104.4
GTEX-1F6IF-0011-R1b-SM-9WG78 60-69 years, male 103.5
GTEX-1HGF4-0011-R1a-SM-CJI3S 60-69 years, male 102.7
GTEX-13N1W-0011-R1b-SM-5MR4T 70-79 years, male 102.3
GTEX-1H1CY-0011-R1a-SM-CKZOZ 60-69 years, female 102.0
GTEX-1A32A-0011-R1a-SM-7P8SQ 50-59 years, female 101.9
GTEX-1HSKV-0011-R1b-SM-CMKH7 60-69 years, male 101.9
GTEX-1F75W-0011-R1a-SM-ARU81 60-69 years, male 101.6
GTEX-1GN73-0011-R1a-SM-CKZNT 60-69 years, male 101.3
GTEX-1HSMO-0011-R1a-SM-CM2SV 60-69 years, male 100.7
GTEX-1C64N-0011-R1b-SM-7P8Q7 50-59 years, male 100.4
GTEX-15DCD-0011-R1b-SM-6LPIJ 70-79 years, female 100.3
GTEX-13FHO-0011-R1b-SM-5KLZG 60-69 years, male 99.1
GTEX-1A8G6-0011-R1a-SM-7P8PC 60-69 years, male 99.1
GTEX-1H3NZ-0011-R1a-SM-CKZP5 60-69 years, male 99.1
GTEX-17F97-0011-R1b-SM-7IGM9 50-59 years, male 97.3
GTEX-17MF6-0011-R1a-SM-72D6O 40-49 years, male 97.2
GTEX-1212Z-0011-R1b-SM-5BC72 60-69 years, male 96.7
GTEX-1H23P-0011-R1a-SM-ACKVC 60-69 years, male 95.2
GTEX-1GN2E-0011-R1b-SM-CE6RJ 60-69 years, male 94.6
GTEX-13SLW-0011-R1a-SM-5S2W7 70-79 years, male 94.4
GTEX-13N2G-0011-R1b-SM-5MR3G 60-69 years, male 93.8
GTEX-1HBPI-0011-R1b-SM-A9SKF 50-59 years, male 93.7
GTEX-NPJ7-0011-R1a-SM-3GACT 60-69 years, female 93.5
GTEX-15UF6-0011-R1a-SM-9QEGH 70-79 years, female 93.0
GTEX-14PJM-0011-R1a-SM-CNPO3 50-59 years, female 92.9
GTEX-1CAV2-0011-R1a-SM-ARZML 40-49 years, female 92.8
GTEX-1J8Q2-0011-R1a-SM-D4P2D 60-69 years, male 92.3
GTEX-1IOXB-0011-R1a-SM-D4P27 50-59 years, male 91.9
GTEX-13CF2-0011-R1a-SM-5LZY1 60-69 years, male 91.7
GTEX-144GO-0011-R1a-SM-5PNWO 60-69 years, male 90.7
GTEX-131YS-0011-R1a-SM-5DUXC 60-69 years, female 90.3
GTEX-1AX9I-0011-R1b-SM-7RHG2 60-69 years, male 89.5
GTEX-1I1GQ-0011-R1a-SM-CY8GG 50-59 years, male 87.5
GTEX-16GPK-0011-R1b-SM-7EWDH 60-69 years, male 87.3
GTEX-1A3MX-0011-R1b-SM-7P8PH 60-69 years, male 87.0
GTEX-1EMGI-0011-R1b-SM-9OSWZ 60-69 years, male 87.0
GTEX-1F48J-0011-R1a-SM-9QEIC 50-59 years, female 86.8
GTEX-NL3H-0011-R1a-SM-48TDJ 60-69 years, male 86.4
GTEX-ZDXO-0011-R1a-SM-4WKF4 60-69 years, male 86.0
GTEX-ZF28-0011-R1a-SM-4WWD1 60-69 years, male 85.2
GTEX-T6MN-0011-R1A-SM-32QOY 50-59 years, male 84.8
GTEX-1J1OQ-0011-R1a-SM-A9G1Z 40-49 years, female 84.8
GTEX-1IY9M-0011-R1a-SM-EXURZ 60-69 years, male 84.7
GTEX-11UD1-0011-R1b-SM-5BC7D 40-49 years, female 84.6
GTEX-14C5O-0011-R1b-SM-6AJBW 60-69 years, male 84.5
GTEX-QVJO-0011-R1A-SM-2S1QI 60-69 years, female 83.2
GTEX-144GL-0011-R1a-SM-5PNZ5 50-59 years, male 83.1
GTEX-ZVZQ-0011-R1a-SM-57WBU 60-69 years, female 82.3
GTEX-ZAB4-0011-R1a-SM-4RGNO 40-49 years, male 82.1
GTEX-14PJO-0011-R1b-SM-6AJAK 60-69 years, male 81.8
GTEX-1B8SF-0011-R1b-SM-7P8Q8 60-69 years, male 81.3
GTEX-13FHP-0011-R1b-SM-5K7XL 50-59 years, male 80.6
GTEX-13FXS-0011-R1a-SM-5K7U6 50-59 years, male 80.0
GTEX-17JCI-0011-R1b-SM-718A3 60-69 years, female 79.7
GTEX-17HG3-0011-R1a-SM-7LG6H 30-39 years, female 79.5
GTEX-139T8-0011-R1a-SM-5HL75 60-69 years, male 79.3
GTEX-X585-0011-R1B-SM-46MVE 50-59 years, male 79.2
GTEX-YJ89-0011-R1a-SM-4RGLS 60-69 years, male 79.2
GTEX-WZTO-0011-R1B-SM-3NMAR 40-49 years, male 79.1
GTEX-13JUV-0011-R1a-SM-5LZY4 40-49 years, female 78.0
GTEX-1C6VR-0011-R1a-SM-7MXUE 60-69 years, male 77.9
GTEX-12WSM-0011-R1a-SM-5LZW6 60-69 years, male 77.8
GTEX-1LG7Y-0011-R1a-SM-EYYWV 50-59 years, male 77.4
GTEX-ZUA1-0011-R1a-SM-4YCE2 40-49 years, male 77.2
GTEX-13X6I-0011-R1b-SM-5PNZC 60-69 years, male 77.0
GTEX-1313W-0011-R1b-SM-5EQ4A 50-59 years, female 76.2
GTEX-13OW7-0011-R1b-SM-5L3HF 50-59 years, male 75.4
GTEX-11DXW-0011-R1a-SM-DNZZD 40-49 years, male 75.4
GTEX-1GF9V-0011-R1a-SM-CKZNQ 60-69 years, male 74.2
GTEX-1H1ZS-0011-R1b-SM-A9G1E 70-79 years, male 74.0
GTEX-11EI6-0011-R1a-SM-DO93L 60-69 years, male 73.0
GTEX-1ICLZ-0011-R1b-SM-A9SM3 60-69 years, male 73.0
GTEX-15ER7-0011-R1b-SM-7KUE1 20-29 years, female 72.0
GTEX-1EX96-0011-R1a-SM-CE6R5 50-59 years, male 71.9
GTEX-13FTY-0011-R1a-SM-5LZXE 40-49 years, female 71.7
GTEX-11WQC-0011-R1b-SM-DO932 60-69 years, male 71.6
GTEX-1CB4G-0011-R1b-SM-9QEHT 60-69 years, male 71.4
GTEX-1B8L1-0011-R1a-SM-7P8SS 60-69 years, male 71.2
GTEX-1F6I4-0011-R1a-SM-9OSWU 60-69 years, male 70.7
GTEX-P44H-0011-R1A-SM-3NM8J 40-49 years, male 70.6
GTEX-14BIM-0011-R1a-SM-69LQI 60-69 years, female 70.5
GTEX-1GTWX-0011-R1a-SM-CE6RL 60-69 years, male 70.0
GTEX-13O3Q-0011-R1b-SM-5KM3L 50-59 years, male 69.8
GTEX-1IDJH-0011-R1b-SM-ARU6U 70-79 years, male 69.7
GTEX-ZE7O-0011-R1a-SM-57WDM 50-59 years, female 69.4
GTEX-TSE9-0011-R1A-SM-3DB7E 60-69 years, female 69.3
GTEX-1HT8W-0011-R1b-SM-CJI3V 30-39 years, male 68.8
GTEX-1GZ2Q-0011-R1a-SM-CJI2Y 40-49 years, male 68.7
GTEX-13112-0011-R1b-SM-5HL7K 50-59 years, male 68.2
GTEX-N7MS-0011-R1a-SM-2HMJG 60-69 years, male 67.7
GTEX-11GS4-0011-R1a-SM-DO129 60-69 years, male 66.9
GTEX-13OW6-0011-R1a-SM-5L3HQ 50-59 years, male 66.8
GTEX-14ASI-0011-R1b-SM-5S2TY 60-69 years, male 66.8
GTEX-QDT8-0011-R1A-SM-32PKS 30-39 years, female 66.5
GTEX-11ONC-0011-R1a-SM-57WD4 60-69 years, male 65.9
GTEX-1IKK5-0011-R1b-SM-CE6SQ 60-69 years, male 65.8
GTEX-12WSF-0011-R1a-SM-5DUVI 70-79 years, male 64.6
GTEX-13PDP-0011-R1a-SM-5PNX5 60-69 years, male 63.9
GTEX-13NYB-0011-R1b-SM-5KM4F 40-49 years, male 63.7
GTEX-14JIY-0011-R1a-SM-68713 60-69 years, male 63.5
GTEX-14E6D-0011-R1b-SM-5YYAW 50-59 years, male 63.0
GTEX-1GF9W-0011-R1a-SM-9QEIQ 60-69 years, male 63.0
GTEX-14ABY-0011-R1a-SM-6EU2W 50-59 years, male 62.4
GTEX-WVLH-0011-R1A-SM-4MVOK 50-59 years, male 62.2
GTEX-1I1HK-0011-R1b-SM-CM2T7 60-69 years, male 62.1
GTEX-16YQH-0011-R1a-SM-7LT8R 30-39 years, male 62.0
GTEX-T5JC-0011-R1A-SM-32PM6 20-29 years, male 61.5
GTEX-1F75A-0011-R1b-SM-CE6RA 50-59 years, male 61.5
GTEX-12WSD-0011-R1b-SM-5LZVY 60-69 years, female 60.8
GTEX-WL46-0011-R1A-SM-3LK6M 50-59 years, male 60.7
GTEX-16Z82-0011-R1b-SM-7EPHZ 60-69 years, male 59.9
GTEX-13NZ8-0011-R1b-SM-5KM3V 60-69 years, female 58.9
GTEX-13FLW-0011-R1b-SM-5LZX2 50-59 years, male 58.0
GTEX-11GSP-0011-R1a-SM-9QEJ3 60-69 years, female 58.0
GTEX-PVOW-0011-R1A-SM-32PL6 40-49 years, male 57.6
GTEX-YFC4-0011-R1a-SM-4V6EH 40-49 years, female 57.5
GTEX-139TT-0011-R1a-SM-5LZVD 60-69 years, male 54.7
GTEX-WWYW-0011-R1A-SM-3TW8G 50-59 years, female 53.9
GTEX-Q2AG-0011-R1A-SM-2HMJI 40-49 years, female 53.0
GTEX-S7SE-0011-R1A-SM-2XCDE 50-59 years, male 48.5
GTEX-13O3O-0011-R1b-SM-5KM2K 60-69 years, female 46.7
GTEX-WHSE-0011-R1A-SM-3P5ZK 20-29 years, male 46.7
GTEX-1EWIQ-0011-R1a-SM-9OSX7 70-79 years, female 46.7
GTEX-RNOR-0011-R1A-SM-CNNP5 50-59 years, female 46.1
GTEX-R55E-0011-R1A-SM-2TC6N 20-29 years, male 45.5
GTEX-Y8DK-0011-R1A-SM-4RGLO 60-69 years, male 45.3
GTEX-P44G-0011-R1A-SM-2I3FE 30-39 years, male 43.9
GTEX-131XH-0011-R1a-SM-5DUWA 50-59 years, male 41.6
GTEX-12WSE-0011-R1b-SM-5GU4V 20-29 years, male 39.8
GTEX-145MH-0011-R1b-SM-5PNWY 50-59 years, male 36.5
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HIPPOCAMPUS - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

88.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 88.9
FF:10153-102I9 76 years, female 102.0
FF:10169-103B7 60 years, female 75.8

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