We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
NPC2
HPA
RESOURCES
  • TISSUE
  • BRAIN
  • SINGLE CELL
  • SUBCELLULAR
  • CANCER
  • BLOOD
  • CELL LINE
  • STRUCTURE & INTERACTION
ABOUT
  • INTRODUCTION
  • HISTORY
  • ORGANIZATION
  • PUBLICATIONS
  • ANTIBODY SUBMISSION
  • ANTIBODY AVAILABILITY
  • ACKNOWLEDGMENTS
  • CONTACT
NEWS
  • NEWS ARTICLES
  • PRESS ROOM
LEARN
  • DICTIONARY
  • PROTEIN CLASSES
  • PROTEIN EVIDENCE
  • METHODS
  • EDUCATIONAL VIDEOS
DATA
  • DOWNLOADABLE DATA
  • PUBLICATION DATA
  • RELEASE HISTORY
HELP
  • ANTIBODY VALIDATION
  • ASSAYS & ANNOTATION
  • DISCLAIMER
  • HELP & FAQ
  • PRIVACY STATEMENT
  • LICENCE & CITATION
Fields »
Search result

Field
Term
Gene name
Class
Subclass
Class
Keyword
Chromosome
External id
Tissue
Cell type
Expression
Antibody panel
Tissue
Main location
Patient ID
Annotation
Tissue
Category
Tau score
Cluster
Reliability
Brain region
Category
Tau score
Brain region
Category
Tau score
Brain region
Category
Tau score
Cluster
Reliability
Tissue
Cell type
Enrichment
Cell type
Category
Tau score
Cell type
Category
Tau score
Cell type
Category
Tau score
Cell lineage
Category
Tau score
Cluster
Cluster
Location
Searches
Location
Cell line
Class
Type
Phase
Reliability
Cancer
Prognosis
Cancer
Category
Cancer
Category
Tau score
Cluster
Variants
Interacting gene (ensg_id)
Type
Number of interactions
Pathway
Category
Score
Score
Score
Validation
Validation
Validation
Validation
Antibodies
Data type
Column


  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • SUBCELL

  • CANCER

  • BLOOD

  • CELL LINE

  • STRUCT & INT

  • NPC2
TISSUE PRIMARY DATA SPINAL CORD Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Tissue proteome
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:264.3 nTPM
HPA Brain:149.4 nTPM
GTEx:264.3 nTPM
FANTOM5:246.8 Scaled Tags Per Million
Pig:135.3 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

149.4
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 145.6
1981 Female, age 72, midline 217.9
2048 Male, age 55, midline 151.3
2816 Male, age 47, midline 137.2
2565 Male, age 75, midline 116.5
2194 Female, age 79, both hemispheres 105.2
Cervical spinal cord, dorsal horn
nTPM: 149.4
2173 Female, age 72, unknown 222.7
2296 Male, age 66, both hemispheres 191.1
2069 Male, age 47, both hemispheres 155.7
2721 Male, age 90, both hemispheres 126.1
1877 Male, age 55, unknown 118.2
2297 Male, age 75, both hemispheres 82.6
Cervical spinal cord, ventral horn
nTPM: 148.6
2098 Female, age 72, unknown 295.5
2809 Male, age 90, both hemispheres 154.9
2295 Male, age 66, both hemispheres 125.7
2480 Male, age 75, both hemispheres 115.5
2820 Female, age 79, both hemispheres 105.3
2068 Male, age 55, unknown 94.7

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

264.3
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 264.3
Samples: 159

Max nTPM: 861.1
Min nTPM: 102.5
Std nTPM: 90.2
Median nTPM: 253.9
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 861.1
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 715.4
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 440.3
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 426.8
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 403.1
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 400.9
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 391.1
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 386.0
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 383.7
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 379.8
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 377.4
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 373.7
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 373.5
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 369.2
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 364.0
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 363.8
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 360.5
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 358.7
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 348.7
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 348.4
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 346.4
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 346.3
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 343.4
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 338.8
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 336.0
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 335.8
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 335.2
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 330.6
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 328.0
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 326.4
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 326.0
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 326.0
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 323.5
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 322.5
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 322.5
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 318.5
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 314.9
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 304.0
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 300.0
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 298.6
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 297.2
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 297.0
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 294.6
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 293.7
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 293.0
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 287.7
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 286.1
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 285.0
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 284.5
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 283.2
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 282.3
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 281.7
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 281.6
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 281.1
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 277.1
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 277.0
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 276.1
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 275.7
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 275.5
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 271.1
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 269.5
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 266.8
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 266.2
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 265.6
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 265.5
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 263.4
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 261.9
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 260.9
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 260.6
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 260.2
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 260.0
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 258.4
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 258.0
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 257.0
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 256.8
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 256.4
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 254.8
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 254.8
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 254.2
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 253.9
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 253.5
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 252.9
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 252.2
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 252.1
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 251.3
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 251.2
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 250.3
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 250.2
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 250.0
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 248.7
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 248.3
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 248.1
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 247.1
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 246.8
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 246.2
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 245.9
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 245.7
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 244.6
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 242.2
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 241.1
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 236.3
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 235.4
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 231.0
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 230.4
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 228.4
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 227.3
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 226.7
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 226.0
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 224.1
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 221.6
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 216.5
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 213.3
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 213.0
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 211.9
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 211.4
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 210.7
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 210.1
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 209.1
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 208.0
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 207.7
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 205.9
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 205.8
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 205.6
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 205.3
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 204.1
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 203.8
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 203.3
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 202.6
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 201.5
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 200.8
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 199.7
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 198.9
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 198.4
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 198.0
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 196.5
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 196.3
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 187.2
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 182.5
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 182.4
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 181.3
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 180.4
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 179.4
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 178.1
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 175.6
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 175.0
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 173.9
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 171.6
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 156.8
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 155.6
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 154.2
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 152.4
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 149.0
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 140.3
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 134.9
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 126.7
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 121.6
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 118.4
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 117.8
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 102.5
Show allShow less

SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

246.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 246.8
FF:10159-103A6 76 years, female 260.4
FF:10181-103D1 60 years, female 233.2

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

135.3
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 133.9
Samples: 4

Max nTPM: 185.6
Min nTPM: 98.9
Sample A Female 101.4
Sample B Female 149.5
Sample C Male 185.6
Sample D Male 98.9
Ventral spinal cord
nTPM: 135.3
Samples: 4

Max nTPM: 144.3
Min nTPM: 126.7
Sample A Female 126.7
Sample B Female 144.3
Sample C Male 138.6
Sample D Male 131.7

Contact

  • NEWS ARTICLES
  • PRESS ROOM

The Project

  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS

The Human Protein Atlas

  • DOWNLOADABLE DATA
  • LICENCE & CITATION
  • HELP & FAQ
The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.


contact@proteinatlas.org