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TISSUE PRIMARY DATA AMYGDALA Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM ENDOMETRIUM
EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX ORAL MUCOSA
OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE SMOOTH MUSCLE
SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Tissue proteome
Amygdala
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:47.4 nTPM
HPA Brain:151.1 nTPM
GTEx:47.4 nTPM
FANTOM5:121.5 Scaled Tags Per Million
Pig:93.8 nTPM
Mouse:196.4 nTPM
Allen mouse:25.2 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

151.1
Sample id Sample description nTPM
Amygdala
nTPM: 86.1
2517 Female, age 94, left hemisphere 119.3
2814 Male, age 76, right hemisphere 114.0
1987 Female, age 91, left hemisphere 92.7
2514 Male, age 75, right hemisphere 64.2
2695 Female, age 67, right hemisphere 40.3
Basal amygdala
nTPM: 136.2
2243 Female, age 91, right hemisphere 199.3
2685 Female, age 94, left hemisphere 179.1
2110 Male, age 80, left hemisphere 152.4
2827 Female, age 67, right hemisphere 105.3
1955 Male, age 76, both hemispheres 100.8
2609 Male, age 75, right hemisphere 80.1
Central amygdala
nTPM: 90.6
2239 Male, age 80, left hemisphere 112.5
2826 Female, age 94, left hemisphere 102.9
1905 Male, age 76, both hemispheres 99.5
2701 Female, age 91, right hemisphere 74.9
2515 Male, age 75, right hemisphere 63.5
Corticomedial amygdala
nTPM: 151.1
2242 Female, age 91, right hemisphere 205.8
2829 Male, age 80, left hemisphere 196.5
2429 Female, age 94, left hemisphere 173.6
2535 Female, age 67, right hemisphere 159.7
2240 Male, age 76, both hemispheres 93.7
2428 Male, age 75, right hemisphere 77.1
Lateral amygdala
nTPM: 84.1
2534 Female, age 94, left hemisphere 113.7
1883 Male, age 76, both hemispheres 104.6
2255 Female, age 91, right hemisphere 102.9
2256 Male, age 80, left hemisphere 79.1
2830 Female, age 67, right hemisphere 54.9
2516 Male, age 75, right hemisphere 49.7

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

47.4
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 47.4
Samples: 152

Max nTPM: 131.8
Min nTPM: 6.8
Std nTPM: 21.8
Median nTPM: 43.9
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 131.8
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 115.1
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 98.5
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 95.2
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 89.2
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 88.9
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 86.4
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 86.3
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 84.7
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 82.5
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 81.1
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 81.0
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 80.7
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 79.5
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 79.4
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 76.6
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 75.8
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 74.1
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 73.4
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 71.5
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 71.0
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 70.6
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 69.2
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 69.0
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 68.6
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 68.3
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 67.1
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 66.7
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 66.1
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 65.4
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 64.9
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 64.6
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 64.4
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 64.3
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 63.6
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 63.5
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 63.4
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 62.7
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 62.3
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 62.2
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 61.8
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 60.5
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 60.2
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 59.9
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 58.7
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 57.7
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 56.6
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 56.5
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 56.3
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 56.1
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 55.6
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 55.2
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 54.5
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 54.2
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 53.9
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 53.8
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 53.3
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 53.2
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 51.6
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 50.4
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 50.0
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 49.8
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 48.8
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 47.9
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 47.8
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 47.7
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 47.4
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 46.8
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 46.6
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 46.5
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 46.2
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 45.4
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 45.2
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 44.7
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 44.5
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 44.4
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 43.5
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 43.0
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 42.9
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 42.4
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 42.4
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 42.0
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 41.8
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 41.7
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 40.8
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 40.7
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 40.4
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 40.2
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 39.1
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 38.7
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 38.6
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 38.5
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 38.4
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 37.7
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 37.1
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 36.9
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 36.7
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 35.9
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 35.5
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 35.4
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 34.8
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 34.5
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 34.4
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 33.7
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 33.4
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 33.0
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 33.0
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 32.9
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 32.7
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 32.3
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 31.5
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 31.3
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 31.0
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 30.9
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 30.8
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 30.7
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 30.5
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 30.5
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 30.0
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 29.6
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 29.2
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 29.0
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 28.8
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 28.5
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 27.3
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 26.1
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 25.8
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 25.7
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 24.9
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 24.6
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 24.4
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 24.3
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 24.0
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 23.9
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 23.7
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 23.6
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 23.0
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 22.6
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 22.5
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 22.4
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 22.3
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 22.2
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 21.4
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 20.3
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 19.0
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 18.8
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 16.1
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 14.0
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 10.4
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 8.3
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 7.8
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 6.8
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

121.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 121.5
FF:10151-102I7 76 years, female 121.5

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

93.8
Pig sample Sample description nTPM
Amygdala
nTPM: 93.8
Samples: 4

Max nTPM: 159.8
Min nTPM: 54.3
Sample A Female 159.8
Sample B Female 54.3
Sample C Male 59.7
Sample D Male 101.4

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

196.4
Mouse sample Sample description nTPM
Amygdala
nTPM: 196.4
Samples: 4

Max nTPM: 214.3
Min nTPM: 182.4
Sample A Male 214.3
Sample B Male 194.3
Sample C Female 182.4
Sample D Female 194.5

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

25.2
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 25.2
71920502 Antisense, RP_050915_02_B10, Mouse strain C57BL/6J (56 days, male) 25.2
74357569 Antisense, RP_050915_02_B10, Mouse strain C57BL/6J (56 days, male) 19.3

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