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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:178.2 nTPM
HPA Brain:253.3 nTPM
GTEx:178.2 nTPM
FANTOM5:58.3 Scaled Tags Per Million
Pig:129.1 nTPM
Mouse:221.3 nTPM
Allen mouse:13.4 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

253.3
Sample id Sample description nTPM
Amygdala
nTPM: 219.0
2814 Male, age 76, right hemisphere 251.3
2517 Female, age 94, left hemisphere 234.1
2514 Male, age 75, right hemisphere 219.2
1987 Female, age 91, left hemisphere 208.0
2695 Female, age 67, right hemisphere 182.5
Basal amygdala
nTPM: 253.3
2243 Female, age 91, right hemisphere 286.2
2685 Female, age 94, left hemisphere 280.1
2827 Female, age 67, right hemisphere 264.7
2609 Male, age 75, right hemisphere 254.0
2110 Male, age 80, left hemisphere 232.1
1955 Male, age 76, both hemispheres 202.8
Central amygdala
nTPM: 249.7
2239 Male, age 80, left hemisphere 282.6
2515 Male, age 75, right hemisphere 269.3
2826 Female, age 94, left hemisphere 268.4
1905 Male, age 76, both hemispheres 224.4
2701 Female, age 91, right hemisphere 203.6
Corticomedial amygdala
nTPM: 252.3
2535 Female, age 67, right hemisphere 294.4
2829 Male, age 80, left hemisphere 271.9
2242 Female, age 91, right hemisphere 265.8
2428 Male, age 75, right hemisphere 251.0
2429 Female, age 94, left hemisphere 250.6
2240 Male, age 76, both hemispheres 180.4
Lateral amygdala
nTPM: 246.4
2534 Female, age 94, left hemisphere 276.0
2830 Female, age 67, right hemisphere 256.3
1883 Male, age 76, both hemispheres 243.7
2256 Male, age 80, left hemisphere 242.4
2255 Female, age 91, right hemisphere 235.0
2516 Male, age 75, right hemisphere 224.9

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

178.2
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 178.2
Samples: 152

Max nTPM: 338.6
Min nTPM: 10.5
Std nTPM: 45.5
Median nTPM: 176.8
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 338.6
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 267.1
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 261.3
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 260.6
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 260.3
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 258.8
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 257.3
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 249.6
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 248.5
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 248.4
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 246.3
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 242.8
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 239.2
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 236.3
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 236.2
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 235.9
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 235.3
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 233.1
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 231.6
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 229.5
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 229.1
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 224.3
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 223.6
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 223.6
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 222.3
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 222.1
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 220.5
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 219.8
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 219.0
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 218.9
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 214.7
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 213.8
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 213.5
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 213.3
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 212.9
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 212.5
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 211.9
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 211.9
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 210.7
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 210.4
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 209.1
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 208.5
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 208.3
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 207.3
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 206.2
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 204.0
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 203.0
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 202.3
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 201.8
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 199.6
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 198.9
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 198.5
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 198.1
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 197.3
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 194.2
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 190.3
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 190.0
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 189.7
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 189.4
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 189.2
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 189.0
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 188.0
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 187.9
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 187.7
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 186.5
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 186.2
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 185.3
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 185.0
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 182.9
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 182.8
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 182.5
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 181.0
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 180.7
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 178.3
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 177.5
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 176.8
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 176.8
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 175.5
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 174.9
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 174.2
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 173.4
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 173.3
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 172.5
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 172.5
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 170.2
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 169.4
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 168.8
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 168.6
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 168.1
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 166.5
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 165.6
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 164.8
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 163.9
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 162.3
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 162.0
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 161.4
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 161.4
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 160.5
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 158.5
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 157.6
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 157.2
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 156.3
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 155.9
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 154.8
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 153.6
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 152.1
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 151.2
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 150.9
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 150.8
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 150.8
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 149.9
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 149.7
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 149.7
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 149.3
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 148.1
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 147.8
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 147.5
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 146.7
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 145.6
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 145.3
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 143.3
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 142.0
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 141.5
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 141.4
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 138.2
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 137.8
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 136.6
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 136.2
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 134.4
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 131.4
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 131.3
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 130.9
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 129.7
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 126.2
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 124.8
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 122.3
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 118.7
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 117.5
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 116.5
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 116.5
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 116.4
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 115.6
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 113.8
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 110.5
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 107.3
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 103.8
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 97.9
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 97.5
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 96.1
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 92.3
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 76.3
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 10.5
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

58.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 58.3
FF:10151-102I7 76 years, female 58.3

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

129.1
Pig sample Sample description nTPM
Amygdala
nTPM: 129.2
Samples: 4

Max nTPM: 147.2
Min nTPM: 101.4
Sample A Female 147.2
Sample B Female 121.7
Sample C Male 146.3
Sample D Male 101.4

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

221.3
Mouse sample Sample description nTPM
Amygdala
nTPM: 221.4
Samples: 4

Max nTPM: 269.6
Min nTPM: 200.6
Sample A Male 200.6
Sample B Male 212.7
Sample C Female 269.6
Sample D Female 202.5

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

13.4
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 13.4
69752059 Antisense, RP_050505_01_A06, Mouse strain C57BL/6J (56 days, male) 13.4

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