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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:253.7 nTPM
HPA Brain:249.8 nTPM
GTEx:253.7 nTPM
FANTOM5:29.1 Scaled Tags Per Million
Pig:198.9 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

249.8
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 207.5
2194 Female, age 79, both hemispheres 233.5
2816 Male, age 47, midline 229.9
1981 Female, age 72, midline 206.9
2565 Male, age 75, midline 202.9
2048 Male, age 55, midline 164.5
Cervical spinal cord, dorsal horn
nTPM: 249.8
2296 Male, age 66, both hemispheres 410.7
2173 Female, age 72, unknown 247.9
2069 Male, age 47, both hemispheres 241.6
1877 Male, age 55, unknown 226.8
2297 Male, age 75, both hemispheres 187.0
2721 Male, age 90, both hemispheres 184.9
Cervical spinal cord, ventral horn
nTPM: 232.6
2480 Male, age 75, both hemispheres 275.6
2820 Female, age 79, both hemispheres 255.5
2068 Male, age 55, unknown 252.8
2809 Male, age 90, both hemispheres 215.4
2295 Male, age 66, both hemispheres 198.4
2098 Female, age 72, unknown 198.1

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

253.7
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 253.7
Samples: 159

Max nTPM: 518.8
Min nTPM: 89.9
Std nTPM: 80.4
Median nTPM: 243.3
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 518.8
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 495.5
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 480.3
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 454.9
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 448.7
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 434.2
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 428.6
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 423.4
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 414.9
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 386.7
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 380.4
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 379.6
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 365.0
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 362.7
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 361.0
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 358.2
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 355.3
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 353.9
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 345.5
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 342.8
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 334.2
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 332.9
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 332.3
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 328.9
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 328.7
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 327.6
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 327.0
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 325.7
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 324.9
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 321.9
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 319.2
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 313.7
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 311.4
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 310.3
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 306.1
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 302.5
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 302.1
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 296.9
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 295.8
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 292.8
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 292.8
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 291.1
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 289.9
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 289.2
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 289.1
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 289.1
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 286.3
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 286.2
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 285.4
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 285.2
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 285.0
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 284.3
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 282.3
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 282.0
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 279.9
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 279.2
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 277.9
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 273.6
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 271.8
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 271.1
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 270.3
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 269.3
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 269.2
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 268.6
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 268.1
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 263.0
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 262.3
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 260.9
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 259.3
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 258.7
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 256.6
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 256.4
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 255.9
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 253.0
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 252.8
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 251.7
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 250.7
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 245.0
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 244.0
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 243.3
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 242.2
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 241.3
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 240.6
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 239.9
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 239.7
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 239.0
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 238.7
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 237.4
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 235.5
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 235.3
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 233.6
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 232.1
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 230.6
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 229.0
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 228.8
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 228.5
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 226.6
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 224.4
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 223.6
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 223.3
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 222.9
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 221.3
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 220.0
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 215.6
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 215.3
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 215.0
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 214.7
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 212.6
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 209.6
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 209.5
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 208.1
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 207.6
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 206.0
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 199.6
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 199.1
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 196.8
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 196.7
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 196.5
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 195.8
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 195.7
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 195.7
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 193.5
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 191.3
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 190.1
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 190.0
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 189.2
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 186.9
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 185.6
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 182.8
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 181.2
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 178.2
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 177.0
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 173.6
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 169.6
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 168.1
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 167.1
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 162.9
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 162.8
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 161.5
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 160.9
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 158.7
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 158.7
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 156.3
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 156.2
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 154.3
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 149.7
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 147.4
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 146.5
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 146.4
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 144.3
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 144.2
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 144.0
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 142.9
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 136.5
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 136.4
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 125.5
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 123.5
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 118.1
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 89.9
Show allShow less

SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

29.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 29.1
FF:10181-103D1 60 years, female 35.8
FF:10159-103A6 76 years, female 22.4

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

198.9
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 176.0
Samples: 4

Max nTPM: 188.6
Min nTPM: 164.9
Sample A Female 181.6
Sample B Female 164.9
Sample C Male 168.9
Sample D Male 188.6
Ventral spinal cord
nTPM: 198.9
Samples: 4

Max nTPM: 215.4
Min nTPM: 186.2
Sample A Female 215.4
Sample B Female 186.2
Sample C Male 188.0
Sample D Male 206.1

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