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TISSUE PRIMARY DATA RETINA Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
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VALIDATION
Dictionary
Tissue proteome
Eye
Retina
RETINA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:1011.6 nTPM
GTEx:1011.6 nTPM
FANTOM5:15.5 Scaled Tags Per Million

RETINA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1011.6
GTEx sample id Sample description nTPM
Retina
Average nTPM: 1011.6
Samples: 105

Max nTPM: 1847.2
Min nTPM: 652.6
Std nTPM: 212.7
Median nTPM:
491_1 89 years, female 1847.2
495_1 57 years, female 1487.6
490_1 67 years, female 1450.4
466_1 57 years, female 1429.7
35_1 74 years, female 1394.0
307_1 66 years, female 1319.7
153_1 70 years, female 1316.8
415_1 77 years, female 1314.5
162_1 79 years, female 1295.9
413_1 59 years, female 1282.8
246_1 77 years, male 1273.3
126_1 63 years, male 1258.2
315_1 62 years, female 1252.1
348_1 84 years, male 1245.1
414_1 84 years, female 1240.3
308_1 70 years, female 1235.2
217_1 76 years, male 1233.7
389_1 86 years, female 1224.3
89_1 63 years, male 1215.6
139_1 64 years, female 1203.9
17_1 71 years, male 1182.8
120_1 70 years, female 1181.3
501_1 88 years, male 1160.5
189_1 76 years, male 1157.0
237_1 82 years, male 1155.2
229_1 69 years, female 1147.0
396_1 62 years, male 1144.5
311_1 78 years, male 1142.3
32_1 67 years, male 1141.5
265_1 87 years, male 1140.6
379_1 60 years, male 1135.5
321_1 62 years, female 1133.2
149_1 88 years, male 1132.5
81_1 67 years, male 1115.7
145_1 84 years, male 1115.2
386_1 76 years, male 1115.2
119_1 70 years, female 1111.1
137_1 83 years, male 1111.1
384_1 83 years, male 1106.7
526_1 61 years, male 1087.3
518_1 75 years, female 1083.2
447_1 81 years, male 1064.6
117_1 61 years, male 1060.1
142_1 61 years, female 1049.8
4_1 88 years, female 1043.6
375_1 74 years, female 1026.3
468_1 89 years, male 1014.9
322_1 76 years, male 1003.1
43_1 64 years, female 1002.8
499_1 55 years, female 996.5
254_1 77 years, female 995.8
42_1 85 years, male 993.1
18_1 88 years, male 987.4
405_1 91 years, male 985.3
355_1 70 years, female 974.7
324_1 76 years, male 971.8
313_1 79 years, female 971.6
377_1 82 years, female 968.6
404_1 82 years, female 967.0
266_1 85 years, male 966.0
2_1 77 years, female 958.6
288_1 66 years, female 957.7
452_1 88 years, female 957.7
251_1 78 years, male 950.5
6_1 73 years, female 947.0
314_1 67 years, male 945.7
394_1 75 years, female 940.5
109_1 81 years, female 933.0
218_1 71 years, female 932.1
376_1 75 years, female 919.9
347_1 72 years, male 891.7
41_1 94 years, female 889.4
320_1 89 years, female 880.7
173_1 67 years, male 872.9
243_1 75 years, male 856.9
335_1 73 years, female 851.9
316_1 62 years, male 848.4
115_1 83 years, male 847.8
503_1 68 years, male 834.1
264_1 73 years, female 829.5
480_1 63 years, male 824.2
291_1 76 years, male 824.1
99_1 64 years, male 807.4
319_1 81 years, male 803.1
177_1 74 years, male 800.7
352_1 62 years, male 797.6
425_1 59 years, female 795.3
286_1 68 years, female 787.3
517_1 88 years, male 785.5
9_1 66 years, female 785.3
317_1 60 years, male 779.4
172_1 72 years, female 775.3
353_1 82 years, female 755.3
406_1 79 years, male 737.3
351_1 91 years, male 736.7
350_1 84 years, female 728.7
293_1 68 years, female 723.6
354_1 81 years, female 720.0
318_1 68 years, male 716.7
295_1 61 years, female 715.0
349_1 83 years, male 714.2
506_1 65 years, male 709.1
163_1 78 years, male 675.4
356_1 87 years, female 662.0
292_1 71 years, male 652.6
Show allShow less

RETINA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

15.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Retina
Scaled Tags Per Million: 15.5
FF:10030-101E3 24-65 years, mixed 15.5

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