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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:578.4 nTPM
HPA Brain:233.3 nTPM
GTEx:578.4 nTPM
FANTOM5:450.5 Scaled Tags Per Million
Pig:0.0 nTPM

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

233.3
Sample id Sample description nTPM
Amygdala
nTPM: 233.3
2695 Female, age 67, right hemisphere 337.4
2514 Male, age 75, right hemisphere 234.9
2814 Male, age 76, right hemisphere 207.0
1987 Female, age 91, left hemisphere 201.4
2517 Female, age 94, left hemisphere 185.7
Basal amygdala
nTPM: 173.4
2827 Female, age 67, right hemisphere 234.4
2609 Male, age 75, right hemisphere 213.0
2685 Female, age 94, left hemisphere 167.7
2110 Male, age 80, left hemisphere 152.1
1955 Male, age 76, both hemispheres 142.7
2243 Female, age 91, right hemisphere 130.1
Central amygdala
nTPM: 201.8
2826 Female, age 94, left hemisphere 328.4
2515 Male, age 75, right hemisphere 229.9
1905 Male, age 76, both hemispheres 162.0
2701 Female, age 91, right hemisphere 146.2
2239 Male, age 80, left hemisphere 142.4
Corticomedial amygdala
nTPM: 162.2
2428 Male, age 75, right hemisphere 208.2
2535 Female, age 67, right hemisphere 172.9
2829 Male, age 80, left hemisphere 162.6
2240 Male, age 76, both hemispheres 153.5
2242 Female, age 91, right hemisphere 145.8
2429 Female, age 94, left hemisphere 130.0
Lateral amygdala
nTPM: 199.4
2830 Female, age 67, right hemisphere 295.6
2516 Male, age 75, right hemisphere 243.2
2534 Female, age 94, left hemisphere 217.4
2256 Male, age 80, left hemisphere 169.2
1883 Male, age 76, both hemispheres 143.8
2255 Female, age 91, right hemisphere 127.1

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

578.4
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 578.4
Samples: 152

Max nTPM: 1474.1
Min nTPM: 296.4
Std nTPM: 178.8
Median nTPM: 545.7
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 1474.1
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 1436.1
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 1245.0
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 1143.8
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 1036.9
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 1015.3
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 1002.7
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 908.2
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 902.7
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 897.4
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 860.3
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 860.2
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 856.1
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 809.7
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 801.3
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 726.0
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 718.4
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 717.3
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 698.1
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 677.6
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 675.0
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 674.7
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 672.7
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 662.6
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 660.3
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 657.2
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 648.4
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 647.6
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 645.5
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 641.8
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 635.8
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 633.9
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 629.5
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 624.2
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 623.9
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 623.6
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 623.2
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 618.2
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 614.9
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 609.6
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 603.6
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 603.4
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 600.8
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 599.9
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 596.4
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 595.3
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 595.1
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 591.1
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 588.1
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 585.9
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 583.9
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 582.8
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 582.0
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 581.6
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 579.6
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 577.1
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 576.8
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 574.2
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 571.3
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 570.1
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 569.5
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 568.4
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 568.4
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 566.8
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 563.7
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 563.3
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 559.4
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 557.7
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 557.4
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 555.2
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 553.5
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 553.0
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 553.0
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 549.9
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 547.2
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 546.0
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 545.3
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 544.3
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 542.2
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 542.0
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 540.4
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 538.1
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 536.8
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 533.9
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 533.1
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 533.1
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 533.0
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 531.3
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 527.1
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 526.7
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 526.7
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 526.0
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 525.4
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 519.5
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 511.6
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 510.8
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 508.9
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 508.8
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 507.6
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 505.9
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 505.8
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 503.5
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 502.4
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 500.0
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 499.4
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 493.5
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 490.5
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 485.8
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 482.3
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 480.7
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 480.2
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 479.2
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 476.2
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 475.0
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 474.2
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 473.0
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 472.0
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 470.2
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 464.6
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 462.5
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 460.5
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 453.6
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 453.5
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 450.5
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 448.2
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 445.8
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 445.8
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 443.7
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 443.2
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 442.2
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 440.9
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 440.7
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 436.7
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 435.7
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 434.5
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 427.8
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 426.3
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 421.6
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 417.9
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 414.0
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 410.1
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 408.0
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 403.8
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 402.1
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 395.4
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 394.1
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 376.2
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 372.2
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 364.3
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 360.8
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 337.6
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 296.4
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

450.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 450.5
FF:10151-102I7 76 years, female 450.5

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

0.0
Pig sample Sample description nTPM
Amygdala
nTPM: 0.0
Samples: 4

Max nTPM: 0.0
Min nTPM: 0.0
Sample A Female 0.0
Sample B Female 0.0
Sample C Male 0.0
Sample D Male 0.0

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