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TISSUE PRIMARY DATA SMALL INTESTINE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Small intestine
Tissue proteome
Intestine
SMALL INTESTINE - Expression summary
Protein expression
Small intestinei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glandular cells: High
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:932.8 nTPM
HPA:710.8 nTPM
GTEx:932.8 nTPM
FANTOM5:1253.2 Scaled Tags Per Million

SMALL INTESTINE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA043717
Glandular cells High



SMALL INTESTINE - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Average nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

710.8
overview
Male, age 65
Small intestine sample 232
nTPM: 908.7
Cell types%
Glandular cells:
55

Smooth muscle cells:
5

Other cell types:
40

overview
Male, age 39
Small intestine sample 233
nTPM: 687.8
Cell types%
Glandular cells:
40

Smooth muscle cells:
5

Other cell types:
55

overview
Male, age 68
Small intestine sample 234
nTPM: 623
Cell types%
Glandular cells:
30

Smooth muscle cells:
15

Other cell types:
55

N/A
Male, age 85
Small intestine sample 235
nTPM: 623.5

SMALL INTESTINE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

932.8
GTEx sample id Sample description nTPM
Small Intestine - Terminal Ileum
Average nTPM: 932.8
Samples: 187

Max nTPM: 1807.5
Min nTPM: 444.7
Std nTPM: 276.7
Median nTPM: 913.4
GTEX-1JJE9-2226-SM-CXZJM 70-79 years, male 1807.5
GTEX-1NSGN-2126-SM-DPRYN 50-59 years, male 1738.1
GTEX-1EMGI-2826-SM-7IGMR 60-69 years, male 1681.9
GTEX-1MGNQ-2326-SM-EV7BG 40-49 years, male 1661.2
GTEX-1R9K4-2326-SM-E6CRB 60-69 years, male 1607.3
GTEX-1PIEJ-1526-SM-E6CP8 20-29 years, female 1579.5
GTEX-1LH75-1926-SM-DIPGD 50-59 years, female 1564.1
GTEX-11TUW-1926-SM-5BC58 60-69 years, male 1508.3
GTEX-1R9JW-1926-SM-EVR4J 30-39 years, female 1465.7
GTEX-1RAZQ-2226-SM-DPRZR 30-39 years, male 1465.7
GTEX-148VJ-2226-SM-5NQ9M 70-79 years, male 1448.8
GTEX-ZAB5-1526-SM-5HL9P 50-59 years, male 1446.6
GTEX-1QP28-1726-SM-E6CRK 50-59 years, female 1424.6
GTEX-183FY-1626-SM-793D8 20-29 years, male 1356.4
GTEX-1JMQK-2426-SM-CXZJU 60-69 years, male 1346.0
GTEX-Y3I4-1326-SM-4TT8Z 50-59 years, male 1340.4
GTEX-1GMR3-2726-SM-7MKFB 40-49 years, male 1319.0
GTEX-1GL5R-2026-SM-7MKHP 50-59 years, male 1314.9
GTEX-1192X-2526-SM-59868 50-59 years, male 1309.6
GTEX-1OKEX-1126-SM-DTXEB 60-69 years, male 1283.3
GTEX-1RAZA-1826-SM-DTXA2 20-29 years, male 1256.6
GTEX-Y5V5-1826-SM-4VDS5 60-69 years, female 1256.5
GTEX-14PK6-1626-SM-6871I 70-79 years, female 1227.8
GTEX-1S82Z-1826-SM-E9TIK 30-39 years, female 1227.7
GTEX-131XE-0926-SM-5HL7J 50-59 years, male 1223.6
GTEX-XPVG-1726-SM-4B65W 50-59 years, male 1219.7
GTEX-16A39-1426-SM-6LLI6 30-39 years, female 1199.7
GTEX-11VI4-1626-SM-5EQKO 40-49 years, female 1188.7
GTEX-1BAJH-2526-SM-7IGOT 70-79 years, male 1186.5
GTEX-WRHK-1026-SM-4MVOD 20-29 years, female 1186.1
GTEX-1PDJ9-1826-SM-E9U66 20-29 years, male 1183.9
GTEX-1OJC3-1626-SM-E9U65 20-29 years, male 1182.1
GTEX-1QW4Y-1226-SM-EWRMY 30-39 years, male 1154.9
GTEX-15EU6-1826-SM-7PC1W 50-59 years, male 1154.8
GTEX-1H11D-2526-SM-9JGGU 40-49 years, male 1154.4
GTEX-117YX-0326-SM-5GICL 50-59 years, male 1153.5
GTEX-1L5NE-1826-SM-EV79T 50-59 years, male 1147.8
GTEX-Y3IK-1726-SM-4YCCR 50-59 years, female 1142.8
GTEX-13NYB-1826-SM-5J1N3 40-49 years, male 1134.0
GTEX-ZQUD-0926-SM-57WE3 30-39 years, male 1132.4
GTEX-Y111-2226-SM-4SOJB 50-59 years, male 1131.8
GTEX-1CB4F-1826-SM-7MGXI 60-69 years, male 1110.1
GTEX-1RAZR-1826-SM-E6CRE 40-49 years, male 1103.7
GTEX-1IKOE-1926-SM-ARU7V 30-39 years, female 1102.4
GTEX-1AX8Z-2526-SM-731E3 60-69 years, male 1098.7
GTEX-1LGOU-1426-SM-D3L8N 20-29 years, female 1095.5
GTEX-11P82-0826-SM-5P9GU 20-29 years, male 1092.2
GTEX-1399U-2126-SM-5IFEZ 50-59 years, female 1085.2
GTEX-11LCK-1926-SM-5A5KE 30-39 years, male 1079.0
GTEX-17KNJ-1626-SM-718AL 50-59 years, male 1078.5
GTEX-1R7EV-1226-SM-DTX82 40-49 years, male 1076.1
GTEX-VUSG-1726-SM-4KKZL 50-59 years, male 1072.9
GTEX-ZF2S-1726-SM-57WFT 50-59 years, female 1069.5
GTEX-13W3W-2026-SM-5K7UL 60-69 years, female 1068.6
GTEX-12WSK-1526-SM-5CVNO 40-49 years, female 1068.5
GTEX-1R9PM-1626-SM-DPRY9 20-29 years, male 1064.7
GTEX-WYJK-1526-SM-4ONCW 50-59 years, male 1057.5
GTEX-1I1GT-1826-SM-ARZLW 60-69 years, female 1056.3
GTEX-16NGA-1126-SM-7KFSY 40-49 years, female 1056.2
GTEX-1QPFJ-2626-SM-DPRZU 30-39 years, female 1055.0
GTEX-18QFQ-1626-SM-72D7H 30-39 years, male 1054.7
GTEX-13OVI-1926-SM-5IJCG 60-69 years, female 1048.3
GTEX-14C39-1826-SM-5ZZW4 40-49 years, male 1039.3
GTEX-1K9T9-2726-SM-D4P3E 50-59 years, female 1033.2
GTEX-ZC5H-2326-SM-4WAYT 40-49 years, female 1022.5
GTEX-17MFQ-1026-SM-7KFSZ 20-29 years, male 1010.1
GTEX-XMK1-1826-SM-4B66F 40-49 years, male 1009.8
GTEX-1B8KZ-1126-SM-7IGLX 50-59 years, male 1009.7
GTEX-1QCLZ-2126-SM-EWRNC 60-69 years, female 1006.4
GTEX-1S5ZA-1326-SM-EV7BB 20-29 years, male 1004.7
GTEX-1F75I-2526-SM-9WPOZ 40-49 years, male 1003.7
GTEX-VJYA-0926-SM-4KL1N 60-69 years, male 995.4
GTEX-WFON-1526-SM-4LVMP 40-49 years, male 993.4
GTEX-145ME-0926-SM-5O9AR 40-49 years, female 992.0
GTEX-1H1DE-1426-SM-9JGHV 20-29 years, male 988.1
GTEX-WH7G-1626-SM-4LVMY 40-49 years, male 984.3
GTEX-1MUQO-2426-SM-EAZ5A 60-69 years, male 979.0
GTEX-14BMU-1426-SM-5TDE5 20-29 years, female 967.2
GTEX-Y5LM-1626-SM-4VDTB 40-49 years, female 965.4
GTEX-1C475-1426-SM-793CH 40-49 years, female 962.2
GTEX-WFG7-1726-SM-4LVME 20-29 years, male 961.2
GTEX-WEY5-1526-SM-4LMJF 40-49 years, female 960.7
GTEX-13O61-1326-SM-5KM31 60-69 years, male 958.0
GTEX-139T6-1026-SM-5IJGC 50-59 years, male 956.3
GTEX-14PKU-1626-SM-6871C 40-49 years, female 953.3
GTEX-139YR-2226-SM-5IFFW 50-59 years, male 951.9
GTEX-1LBAC-1526-SM-CXZKU 20-29 years, male 949.3
GTEX-14XAO-1926-SM-6ETZO 60-69 years, female 945.4
GTEX-ZA64-1226-SM-5HL7B 20-29 years, male 944.0
GTEX-12BJ1-1926-SM-5HL9Z 60-69 years, male 930.7
GTEX-111CU-1326-SM-5NQ8L 50-59 years, male 924.5
GTEX-ZTPG-2626-SM-57WFX 20-29 years, female 921.8
GTEX-X15G-1426-SM-4PQZK 50-59 years, female 915.8
GTEX-13FH7-1226-SM-5IJFK 50-59 years, female 913.4
GTEX-13111-1426-SM-5DUW3 50-59 years, male 912.4
GTEX-15DZA-0826-SM-6AJBF 30-39 years, female 908.1
GTEX-WFG8-1626-SM-4LVMB 20-29 years, male 907.4
GTEX-11XUK-1426-SM-5EQMG 40-49 years, female 905.2
GTEX-1KXAM-2026-SM-DHXKI 60-69 years, male 902.8
GTEX-ZPIC-2326-SM-57WDW 40-49 years, female 893.1
GTEX-13QBU-1926-SM-5IJEW 40-49 years, female 881.6
GTEX-1HSMQ-2226-SM-C1YRD 50-59 years, male 881.5
GTEX-13RTK-0826-SM-5Q5C6 20-29 years, male 871.0
GTEX-ZLFU-1526-SM-4WWBT 40-49 years, male 871.0
GTEX-ZQG8-2526-SM-57WEQ 60-69 years, female 862.5
GTEX-1GMR2-1026-SM-7MKHJ 50-59 years, male 859.9
GTEX-ZF29-1626-SM-4WKFJ 60-69 years, female 858.9
GTEX-13113-1226-SM-5EGHT 60-69 years, female 857.7
GTEX-1J8QM-1026-SM-C1YQA 60-69 years, female 852.0
GTEX-13X6H-1826-SM-7EWCZ 50-59 years, female 850.4
GTEX-1497J-1926-SM-5TDCC 60-69 years, male 839.4
GTEX-UPK5-2026-SM-4JBIM 40-49 years, male 834.3
GTEX-ZP4G-1626-SM-57WGD 20-29 years, female 833.9
GTEX-1C64O-2526-SM-79ONO 60-69 years, male 831.6
GTEX-ZG7Y-1926-SM-DNZZ5 50-59 years, male 829.0
GTEX-WFJO-0926-SM-4LVM2 30-39 years, male 828.1
GTEX-ZXES-1526-SM-5NQ95 30-39 years, female 817.6
GTEX-11NSD-1726-SM-5N9C3 20-29 years, male 808.7
GTEX-1QP2A-2426-SM-EXOJA 50-59 years, male 798.9
GTEX-ZVP2-1726-SM-5GU5P 50-59 years, male 792.0
GTEX-13O21-1026-SM-5IJDU 50-59 years, male 790.8
GTEX-14PKV-2026-SM-6AJ9A 20-29 years, female 790.4
GTEX-1399R-2026-SM-5K7WN 30-39 years, male 785.2
GTEX-131XG-1726-SM-5LZUR 50-59 years, female 781.6
GTEX-1R9K5-2026-SM-E6CPS 50-59 years, male 776.2
GTEX-18A66-2526-SM-7KFTZ 60-69 years, male 775.5
GTEX-Y114-1426-SM-4TT6W 50-59 years, female 770.6
GTEX-XGQ4-1326-SM-4GIDU 50-59 years, male 768.3
GTEX-17HHE-1726-SM-79OKT 50-59 years, male 767.7
GTEX-1R7EU-1326-SM-E6CQ6 60-69 years, male 767.6
GTEX-Z9EW-0926-SM-5CVMM 40-49 years, male 760.1
GTEX-131XF-1326-SM-5GCMQ 60-69 years, male 758.8
GTEX-1JN76-1126-SM-C1YRL 20-29 years, female 749.1
GTEX-14E6E-1626-SM-5RQI7 30-39 years, male 746.7
GTEX-16MTA-1526-SM-6LPJB 50-59 years, male 746.7
GTEX-ZEX8-1826-SM-57WBH 50-59 years, male 744.4
GTEX-X5EB-1626-SM-4E3IV 40-49 years, male 742.7
GTEX-1JK1U-1226-SM-CNNPN 60-69 years, male 739.7
GTEX-ZZ64-0526-SM-5GZXM 20-29 years, male 734.0
GTEX-14PJ3-1326-SM-664O7 50-59 years, male 726.8
GTEX-1CAMR-0826-SM-7MKFK 20-29 years, male 720.5
GTEX-1CAMS-2426-SM-7DHMV 40-49 years, female 714.4
GTEX-11DXZ-1326-SM-5H11X 50-59 years, male 703.1
GTEX-ZVT2-2126-SM-5NQ93 50-59 years, female 693.3
GTEX-15G1A-1726-SM-6LPI4 30-39 years, male 691.7
GTEX-144GM-1026-SM-79OKU 20-29 years, male 689.4
GTEX-11I78-1126-SM-5A5K5 50-59 years, female 684.4
GTEX-16AAH-1426-SM-7KFTR 50-59 years, male 682.1
GTEX-ZLWG-1626-SM-DNZZ1 50-59 years, female 675.5
GTEX-11EQ9-1326-SM-5985X 30-39 years, male 672.9
GTEX-ZYFG-2026-SM-5E43Y 60-69 years, female 672.7
GTEX-11P7K-1626-SM-5GU63 30-39 years, male 670.5
GTEX-WHSB-1026-SM-4M1XN 50-59 years, male 670.1
GTEX-14DAR-1426-SM-5RQIR 50-59 years, male 662.8
GTEX-14PN3-2026-SM-68729 60-69 years, female 662.0
GTEX-13CF3-1226-SM-5LZXN 60-69 years, female 657.8
GTEX-145LT-1026-SM-5LU9O 40-49 years, male 657.8
GTEX-1B8KE-1726-SM-7IGMN 50-59 years, male 657.1
GTEX-YEC4-1726-SM-4W21E 40-49 years, male 656.7
GTEX-XUZC-1426-SM-4BRV3 30-39 years, female 647.3
GTEX-1399S-2026-SM-5KM4B 30-39 years, female 646.2
GTEX-XBED-1426-SM-4AT4G 60-69 years, male 644.1
GTEX-133LE-1426-SM-5IFH1 20-29 years, female 641.8
GTEX-11DXX-1626-SM-5H11H 60-69 years, female 639.1
GTEX-1AMFI-1926-SM-731F2 50-59 years, female 627.8
GTEX-WY7C-1826-SM-4ONCE 50-59 years, male 620.9
GTEX-XXEK-1026-SM-4BRUW 50-59 years, male 617.6
GTEX-14PJN-0826-SM-686ZL 30-39 years, male 613.6
GTEX-ZPCL-1726-SM-57WEO 60-69 years, female 590.1
GTEX-13D11-0726-SM-5LZZB 50-59 years, female 589.4
GTEX-13PL7-2626-SM-5IFH4 60-69 years, female 584.0
GTEX-Y9LG-1626-SM-5IFHM 30-39 years, male 566.3
GTEX-ZLV1-1126-SM-4WWBW 60-69 years, female 551.1
GTEX-YB5E-1526-SM-5IFIE 40-49 years, male 545.1
GTEX-ZTX8-0526-SM-59HLD 20-29 years, male 538.7
GTEX-ZVZP-1826-SM-5GZXB 50-59 years, male 533.3
GTEX-XAJ8-0526-SM-47JYK 40-49 years, male 532.9
GTEX-13FTW-2026-SM-5IJE2 40-49 years, male 525.6
GTEX-1122O-1326-SM-5H11F 60-69 years, female 524.4
GTEX-1J8Q3-2526-SM-CNNQ4 60-69 years, male 523.5
GTEX-WQUQ-2426-SM-4MVNW 60-69 years, male 520.3
GTEX-14PJ6-1726-SM-6AJBN 60-69 years, female 516.5
GTEX-YF7O-1826-SM-5IFIU 50-59 years, male 502.0
GTEX-YFCO-1326-SM-664NV 40-49 years, male 498.9
GTEX-ZDTT-1726-SM-5HL69 60-69 years, male 494.4
GTEX-ZTSS-0926-SM-59865 40-49 years, male 487.7
GTEX-111YS-1426-SM-5GID8 60-69 years, male 444.7
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SMALL INTESTINE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

1253.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Small intestine
Scaled Tags Per Million: 1253.2
FF:10024-101D6 15,40,85 years, mixed 1253.2

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