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TISSUE PRIMARY DATA VAGINA Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Vagina
Tissue proteome
Vagina
VAGINA - Expression summary
Protein expression
Vaginai

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Squamous epithelial cells: High
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:1233.9 nTPM
GTEx:1233.9 nTPM
FANTOM5:1907.8 Scaled Tags Per Million

VAGINA - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA043717
Squamous epithelial cells High


VAGINA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1233.9
GTEx sample id Sample description nTPM
Vagina
Average nTPM: 1233.9
Samples: 156

Max nTPM: 2556.7
Min nTPM: 732.7
Std nTPM: 269.5
Median nTPM: 1205.7
GTEX-1AMFI-1526-SM-73KVY 50-59 years, female 2556.7
GTEX-NPJ7-2526-SM-EV79A 60-69 years, female 2496.9
GTEX-ZE7O-2426-SM-57WD7 50-59 years, female 1912.6
GTEX-1GMR8-2526-SM-7RHI9 50-59 years, female 1841.2
GTEX-SN8G-2626-SM-EXUQT 50-59 years, female 1749.3
GTEX-15UF6-2126-SM-6M46Z 70-79 years, female 1668.1
GTEX-183WM-2126-SM-7LG4I 70-79 years, female 1653.7
GTEX-1S5ZU-2626-SM-E9TII 20-29 years, female 1628.7
GTEX-1LH75-1726-SM-DHXKZ 50-59 years, female 1607.4
GTEX-ZYVF-0326-SM-5GIES 50-59 years, female 1583.1
GTEX-12ZZX-1926-SM-5EGKC 40-49 years, female 1580.4
GTEX-ZQG8-1126-SM-51MRL 60-69 years, female 1562.7
GTEX-1117F-2526-SM-5GZY6 60-69 years, female 1558.6
GTEX-16NPV-2526-SM-6M483 50-59 years, female 1558.6
GTEX-PLZ4-2726-SM-3P61A 50-59 years, female 1550.5
GTEX-13OVI-0926-SM-5J1MI 60-69 years, female 1542.7
GTEX-Y8LW-1426-SM-5RQJJ 50-59 years, female 1537.5
GTEX-S4UY-1326-SM-4AD4X 40-49 years, female 1534.0
GTEX-ZTPG-2226-SM-57WF9 20-29 years, female 1515.7
GTEX-OHPN-2426-SM-E9TI5 60-69 years, female 1507.0
GTEX-TSE9-2526-SM-4DXUS 60-69 years, female 1498.1
GTEX-ZAK1-2426-SM-EXOHM 50-59 years, female 1492.5
GTEX-11GSP-2226-SM-5HL5Q 60-69 years, female 1490.6
GTEX-Y114-1926-SM-4TT8J 50-59 years, female 1488.2
GTEX-14AS3-1726-SM-5RQJV 40-49 years, female 1487.1
GTEX-1F48J-2526-SM-7P8TU 50-59 years, female 1479.7
GTEX-OHPK-2526-SM-3MJH9 50-59 years, female 1449.8
GTEX-1LVAM-1926-SM-E6CIM 50-59 years, female 1448.1
GTEX-1HBPM-2726-SM-9WYUA 60-69 years, female 1446.4
GTEX-11P81-2126-SM-5HL6N 30-39 years, female 1445.0
GTEX-1JMQL-2326-SM-CNNPV 50-59 years, female 1440.9
GTEX-1IE54-2626-SM-CMKFY 40-49 years, female 1426.3
GTEX-ZVT3-2726-SM-5GU5X 60-69 years, female 1422.8
GTEX-147F3-1526-SM-5SIAK 50-59 years, female 1422.2
GTEX-SE5C-1126-SM-4BRWZ 40-49 years, female 1421.1
GTEX-131XG-2126-SM-5DUXG 50-59 years, female 1414.1
GTEX-1J1OQ-1826-SM-CL53R 40-49 years, female 1399.1
GTEX-1LGOU-1126-SM-D3LAI 20-29 years, female 1393.6
GTEX-QVJO-2526-SM-CYPRA 60-69 years, female 1390.0
GTEX-11TTK-2726-SM-5GU58 60-69 years, female 1386.4
GTEX-14H4A-2426-SM-664OQ 40-49 years, female 1377.1
GTEX-WEY5-0826-SM-4LMIH 40-49 years, female 1367.0
GTEX-ZXES-0626-SM-5E45P 30-39 years, female 1363.4
GTEX-13D11-1326-SM-5IJFY 50-59 years, female 1361.2
GTEX-12WSD-2926-SM-5LZUH 60-69 years, female 1348.2
GTEX-1HCU8-2026-SM-9YFLE 60-69 years, female 1343.6
GTEX-1GF9U-1926-SM-7P8TZ 40-49 years, female 1340.4
GTEX-RWS6-1726-SM-47JXP 60-69 years, female 1337.1
GTEX-145LS-2526-SM-5TDC9 60-69 years, female 1335.0
GTEX-TMMY-1926-SM-4DXUU 40-49 years, female 1331.7
GTEX-1CAMS-2326-SM-793CR 40-49 years, female 1327.2
GTEX-X8HC-2826-SM-46MWJ 50-59 years, female 1321.5
GTEX-T6MO-1226-SM-4DM5S 40-49 years, female 1317.0
GTEX-ZYY3-2626-SM-5N9DH 60-69 years, female 1316.6
GTEX-13U4I-2026-SM-5LU3L 40-49 years, female 1304.9
GTEX-146FR-2426-SM-5NQAU 60-69 years, female 1304.0
GTEX-11EMC-1926-SM-5A5JU 60-69 years, female 1300.2
GTEX-15SHU-2926-SM-7KUKT 40-49 years, female 1296.5
GTEX-18D9A-1026-SM-7KFRU 30-39 years, female 1288.5
GTEX-17F9Y-2326-SM-7DUFP 70-79 years, female 1265.9
GTEX-1HCU6-2326-SM-ACKXP 60-69 years, female 1264.9
GTEX-1QP28-1426-SM-EVR4E 50-59 years, female 1261.7
GTEX-S7SF-1426-SM-4AT5A 20-29 years, female 1260.1
GTEX-1JN1M-2326-SM-ARZNG 60-69 years, female 1258.9
GTEX-15SB6-1426-SM-7KUEM 50-59 years, female 1250.6
GTEX-ZC5H-2226-SM-4WAWS 40-49 years, female 1247.6
GTEX-14JG6-0726-SM-69LQH 30-39 years, female 1245.9
GTEX-1LVAN-1626-SM-CNPQ7 50-59 years, female 1236.9
GTEX-XUZC-1226-SM-4BRVJ 30-39 years, female 1234.2
GTEX-ZLWG-1126-SM-4WWFQ 50-59 years, female 1231.6
GTEX-1JN76-1526-SM-CNPPF 20-29 years, female 1227.6
GTEX-1IDJU-1026-SM-AHZ2U 60-69 years, female 1225.5
GTEX-13QIC-1826-SM-5J1MY 60-69 years, female 1224.5
GTEX-1EWIQ-2326-SM-7IGNF 70-79 years, female 1217.5
GTEX-15DYW-2926-SM-6PANA 60-69 years, female 1216.1
GTEX-YFC4-2926-SM-5IFJ8 40-49 years, female 1211.4
GTEX-1R9JW-1426-SM-DTX9K 30-39 years, female 1209.1
GTEX-ZZPU-2226-SM-5EGIV 50-59 years, female 1206.4
GTEX-1F5PL-1826-SM-7P8PP 40-49 years, female 1204.9
GTEX-13PL7-2726-SM-5L3GB 60-69 years, female 1199.4
GTEX-S4P3-1126-SM-4AD52 50-59 years, female 1194.5
GTEX-1MCYP-1326-SM-EV7AD 20-29 years, female 1193.4
GTEX-14BMU-1926-SM-5S2QC 20-29 years, female 1189.7
GTEX-1QCLZ-2226-SM-DTX7R 60-69 years, female 1184.8
GTEX-W5WG-1026-SM-4LMIF 50-59 years, female 1183.8
GTEX-11I78-2026-SM-5987C 50-59 years, female 1178.8
GTEX-1A8FM-2426-SM-7IGPE 50-59 years, female 1177.3
GTEX-11EM3-1826-SM-5A5KO 20-29 years, female 1174.5
GTEX-131YS-2426-SM-5J2OD 60-69 years, female 1167.1
GTEX-1PIEJ-1926-SM-EVYB7 20-29 years, female 1166.5
GTEX-QDT8-2526-SM-48TYX 30-39 years, female 1154.4
GTEX-12WSJ-1326-SM-5GCOB 40-49 years, female 1152.2
GTEX-N7MT-1926-SM-3LK5N 60-69 years, female 1148.3
GTEX-1LNCM-1026-SM-E9U5D 50-59 years, female 1144.5
GTEX-P4PP-2526-SM-3P61P 30-39 years, female 1135.0
GTEX-S341-1226-SM-4AD5S 40-49 years, female 1133.3
GTEX-113JC-1926-SM-5N9GE 50-59 years, female 1117.9
GTEX-WYVS-1426-SM-4ONCV 40-49 years, female 1115.2
GTEX-1QPFJ-1626-SM-DTX7X 30-39 years, female 1115.1
GTEX-11DXX-1726-SM-5H11T 60-69 years, female 1112.7
GTEX-1GN1U-2426-SM-9KNTU 50-59 years, female 1105.4
GTEX-14DAQ-2326-SM-5S2QX 60-69 years, female 1102.6
GTEX-ZV6S-1326-SM-59HJA 40-49 years, female 1101.3
GTEX-1399U-1526-SM-5J2N7 50-59 years, female 1101.0
GTEX-13QBU-1726-SM-5IJFQ 40-49 years, female 1096.4
GTEX-18A7A-2826-SM-7LT8J 50-59 years, female 1093.0
GTEX-1I4MK-1726-SM-ARL7O 50-59 years, female 1085.2
GTEX-16NGA-1626-SM-72D6M 40-49 years, female 1084.5
GTEX-P78B-2226-SM-3P5ZZ 40-49 years, female 1083.1
GTEX-ZGAY-2226-SM-4YCCX 40-49 years, female 1080.5
GTEX-1399S-2326-SM-5K7YV 30-39 years, female 1079.8
GTEX-14PKU-1326-SM-6871B 40-49 years, female 1076.2
GTEX-13PVR-1426-SM-5S2PW 60-69 years, female 1074.2
GTEX-1LGRB-2126-SM-COH48 50-59 years, female 1062.6
GTEX-13W3W-2326-SM-5LU4Y 60-69 years, female 1061.7
GTEX-1GN1W-1526-SM-7P8TG 50-59 years, female 1052.9
GTEX-Y3IK-2226-SM-4YCD4 50-59 years, female 1051.5
GTEX-PWN1-2526-SM-48TDS 40-49 years, female 1051.4
GTEX-145ME-1426-SM-5RQJS 40-49 years, female 1050.3
GTEX-1C475-0526-SM-793AC 40-49 years, female 1047.9
GTEX-14PJM-2926-SM-69LOE 50-59 years, female 1046.7
GTEX-11XUK-1326-SM-5EQM4 40-49 years, female 1028.8
GTEX-13N11-1526-SM-5L3FL 50-59 years, female 1021.5
GTEX-WRHU-2926-SM-4MVNQ 50-59 years, female 1020.3
GTEX-U3ZN-0926-SM-4DXTU 30-39 years, female 1016.6
GTEX-1HFI7-1126-SM-A96S5 50-59 years, female 1013.8
GTEX-1J8EW-2526-SM-CKZO2 60-69 years, female 1004.2
GTEX-14PN3-1626-SM-6AJAV 60-69 years, female 996.4
GTEX-Q734-1426-SM-DTXFX 40-49 years, female 990.9
GTEX-14A5I-2726-SM-5SIB3 50-59 years, female 988.3
GTEX-1HBPH-2926-SM-9WPNX 40-49 years, female 985.2
GTEX-14PJ6-1626-SM-6872D 60-69 years, female 980.8
GTEX-146FH-2626-SM-5Q5E1 50-59 years, female 969.5
GTEX-1NUQO-1826-SM-E6CQU 20-29 years, female 963.7
GTEX-1I1GT-1226-SM-B2LVK 60-69 years, female 946.0
GTEX-1ICG6-1626-SM-ARL81 70-79 years, female 942.2
GTEX-T2IS-1926-SM-4DM74 20-29 years, female 942.0
GTEX-OHPL-2526-SM-3MJGT 60-69 years, female 940.2
GTEX-ZVT2-0626-SM-5GICR 50-59 years, female 940.2
GTEX-ZP4G-0826-SM-4WWF3 20-29 years, female 938.3
GTEX-PWCY-1726-SM-48TD3 20-29 years, female 930.0
GTEX-1HCUA-1026-SM-A9SMI 50-59 years, female 927.7
GTEX-TML8-1126-SM-4DXSS 40-49 years, female 927.2
GTEX-XUW1-0326-SM-4BOOR 50-59 years, female 924.8
GTEX-QCQG-1226-SM-48U23 50-59 years, female 909.2
GTEX-PX3G-2526-SM-48TZV 20-29 years, female 903.4
GTEX-15ER7-2526-SM-7KUFW 20-29 years, female 901.1
GTEX-1MCC2-1126-SM-EVYD6 30-39 years, female 891.9
GTEX-UJHI-1326-SM-4IHJO 50-59 years, female 889.4
GTEX-17JCI-2526-SM-7DHLB 60-69 years, female 868.4
GTEX-15SDE-1726-SM-6LPJS 50-59 years, female 858.3
GTEX-11VI4-0726-SM-5GU5B 40-49 years, female 857.3
GTEX-X15G-1926-SM-4PQZQ 50-59 years, female 842.5
GTEX-YJ8O-1226-SM-5P9JE 40-49 years, female 811.1
GTEX-RU1J-1426-SM-46MUV 20-29 years, female 783.7
GTEX-XV7Q-1626-SM-4BRWC 40-49 years, female 732.7
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VAGINA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

1907.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Vagina
Scaled Tags Per Million: 1907.8
FF:10204-103F6 68 years, female 1907.8

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