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  • HNRNPA2B1
BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:350.7 nTPM
HPA Brain:39.4 nTPM
GTEx:350.7 nTPM
FANTOM5:659.9 Scaled Tags Per Million
Pig:198.7 nTPM
Mouse:351.2 nTPM
Allen mouse:0.0 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

39.4
Sample id Sample description nTPM
Amygdala
nTPM: 39.4
2514 Male, age 75, right hemisphere 49.0
2695 Female, age 67, right hemisphere 48.2
2814 Male, age 76, right hemisphere 42.4
2517 Female, age 94, left hemisphere 29.4
1987 Female, age 91, left hemisphere 28.0
Basal amygdala
nTPM: 32.8
1955 Male, age 76, both hemispheres 40.4
2609 Male, age 75, right hemisphere 38.3
2685 Female, age 94, left hemisphere 32.5
2827 Female, age 67, right hemisphere 30.1
2110 Male, age 80, left hemisphere 28.1
2243 Female, age 91, right hemisphere 27.1
Central amygdala
nTPM: 34.6
1905 Male, age 76, both hemispheres 38.9
2701 Female, age 91, right hemisphere 35.7
2515 Male, age 75, right hemisphere 35.6
2239 Male, age 80, left hemisphere 35.1
2826 Female, age 94, left hemisphere 27.8
Corticomedial amygdala
nTPM: 30.9
2240 Male, age 76, both hemispheres 41.6
2428 Male, age 75, right hemisphere 32.3
2829 Male, age 80, left hemisphere 30.3
2535 Female, age 67, right hemisphere 28.5
2242 Female, age 91, right hemisphere 28.4
2429 Female, age 94, left hemisphere 24.2
Lateral amygdala
nTPM: 32.8
2516 Male, age 75, right hemisphere 43.9
1883 Male, age 76, both hemispheres 39.1
2256 Male, age 80, left hemisphere 32.1
2534 Female, age 94, left hemisphere 28.0
2830 Female, age 67, right hemisphere 27.2
2255 Female, age 91, right hemisphere 26.3

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

350.7
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 350.7
Samples: 152

Max nTPM: 727.5
Min nTPM: 262.2
Std nTPM: 59.8
Median nTPM: 341.4
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 727.5
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 612.6
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 501.7
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 501.0
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 475.2
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 475.2
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 473.0
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 459.3
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 454.9
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 443.8
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 439.9
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 433.2
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 420.8
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 420.1
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 416.2
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 411.5
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 403.4
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 402.3
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 402.0
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 400.9
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 391.0
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 390.7
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 390.3
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 389.7
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 388.8
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 384.6
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 384.2
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 383.1
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 383.0
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 382.5
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 382.4
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 379.1
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 377.1
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 375.9
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 373.0
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 372.0
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 368.1
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 367.4
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 365.5
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 365.1
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 364.7
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 364.5
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 364.1
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 363.7
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 363.3
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 363.1
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 361.9
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 361.8
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 360.4
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 360.2
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 360.0
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 359.4
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 359.4
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 358.7
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 357.8
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 357.7
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 357.3
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 356.0
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 352.9
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 351.5
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 351.3
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 351.1
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 350.2
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 349.2
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 348.4
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 347.9
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 347.7
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 346.4
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 344.5
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 344.4
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 343.4
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 343.3
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 342.9
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 342.6
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 342.1
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 341.7
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 341.0
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 340.1
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 339.8
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 339.4
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 339.1
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 339.1
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 338.3
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 336.9
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 336.8
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 336.5
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 336.2
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 335.7
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 335.4
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 333.6
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 333.4
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 331.8
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 331.5
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 331.5
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 331.0
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 329.1
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 328.8
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 325.6
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 325.4
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 325.0
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 322.7
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 322.0
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 321.1
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 320.9
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 320.2
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 318.9
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 318.5
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 318.4
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 318.0
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 316.9
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 316.5
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 315.7
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 315.4
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 315.2
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 315.1
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 314.0
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 313.2
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 312.6
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 312.0
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 311.8
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 311.7
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 310.1
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 309.6
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 307.7
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 307.2
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 306.6
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 305.9
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 303.5
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 303.3
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 303.2
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 300.2
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 299.5
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 299.1
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 297.3
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 296.9
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 294.8
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 294.0
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 293.6
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 291.3
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 289.1
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 288.8
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 287.7
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 279.1
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 278.5
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 278.2
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 276.1
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 275.1
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 273.6
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 273.6
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 272.3
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 265.8
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 262.2
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

659.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 659.9
FF:10151-102I7 76 years, female 659.9

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

198.7
Pig sample Sample description nTPM
Amygdala
nTPM: 198.7
Samples: 4

Max nTPM: 225.5
Min nTPM: 178.7
Sample A Female 208.1
Sample B Female 225.5
Sample C Male 178.7
Sample D Male 182.6

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

351.2
Mouse sample Sample description nTPM
Amygdala
nTPM: 351.2
Samples: 4

Max nTPM: 360.0
Min nTPM: 345.9
Sample A Male 347.0
Sample B Male 345.9
Sample C Female 360.0
Sample D Female 351.8

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

0.0
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 0.0
71232819 Antisense, RP_050503_02_A04, Mouse strain C57BL/6J (56 days, male) 0.0

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