MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:355.9 nTPM
HPA Brain:45.3 nTPM
GTEx:355.9 nTPM
FANTOM5:1064.0 Scaled Tags Per Million
Pig:224.5 nTPM
Mouse:350.0 nTPM
Allen mouse:0.0 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 45.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 37.0
1870 Female, age 42, unknown 48.0
1833 Male, age 53, unknown 44.1
1830 Male, age 51, unknown 41.9
2411 Female, age 72, unknown 41.3
2219 Male, age 76, both hemispheres 40.7
2019 Male, age 18, unknown 39.0
1827 Male, age 72, unknown 35.9
2828 Female, age 72, unknown 30.7
2666 Male, age 74, left hemisphere 30.3
2586 Male, age 75, left hemisphere 17.7
Dorsal raphe nucleus
nTPM: 34.9
2750 Male, age 76, both hemispheres 47.9
1828 Male, age 53, unknown 36.5
2016 Female, age 72, unknown 31.6
2047 Male, age 72, unknown 29.3
2298 Female, age 72, unknown 29.0
Inferior colliculus
nTPM: 40.6
2849 Male, age 72, unknown 44.8
1848 Female, age 42, unknown 40.6
1890 Male, age 53, unknown 38.6
2097 Female, age 72, unknown 38.2
Median raphe nucleus
nTPM: 45.3
2220 Male, age 76, midline 45.3
Periaquaductal grey, anterior
nTPM: 34.8
2502 Female, age 75, unknown 38.1
1947 Male, age 18, unknown 35.4
1795 Male, age 51, unknown 30.7
Periaquaductal grey, dorsal
nTPM: 41.9
2850 Male, age 76, both hemispheres 55.1
2464 Female, age 72, unknown 40.7
1831 Male, age 72, unknown 39.1
1840 Male, age 53, unknown 32.8
Periaquaductal grey, lateral
nTPM: 37.0
2140 Male, age 76, both hemispheres 44.5
2272 Male, age 74, both hemispheres 37.7
2053 Male, age 18, unknown 28.8
Pretectal area
nTPM: 39.9
2667 Female, age 75, unknown 50.4
1815 Male, age 53, unknown 44.4
2316 Male, age 76, right hemisphere 43.4
2825 Male, age 18, unknown 41.5
1816 Male, age 51, unknown 39.5
2007 Male, age 72, unknown 39.3
1817 Female, age 42, unknown 39.0
2224 Female, age 72, unknown 39.0
1944 Female, age 72, unknown 38.6
2273 Male, age 74, both hemispheres 36.7
2407 Male, age 75, both hemispheres 26.7
Red nucleus
nTPM: 44.3
2823 Male, age 76, right hemisphere 59.9
2503 Female, age 72, unknown 52.2
1954 Female, age 42, unknown 50.2
1904 Male, age 53, unknown 49.2
1865 Male, age 51, unknown 49.0
1821 Female, age 72, unknown 48.4
2725 Female, age 75, unknown 45.3
2785 Male, age 18, unknown 41.1
2769 Male, age 72, unknown 39.9
2227 Male, age 72, unknown 39.8
2588 Male, age 74, left hemisphere 31.3
2584 Male, age 75, left hemisphere 25.0
Substantia nigra
nTPM: 36.5
2699 Male, age 18, unknown 46.7
2241 Male, age 72, unknown 43.3
2409 Female, age 72, unknown 39.8
1889 Female, age 72, unknown 39.7
1941 Male, age 53, unknown 37.2
2665 Male, age 74, both hemispheres 37.0
1851 Male, age 51, unknown 33.6
1916 Female, age 42, unknown 33.3
2583 Male, age 75, right hemisphere 27.1
2590 Female, age 75, unknown 27.1
Superior colliculus
nTPM: 38.6
1913 Female, age 42, unknown 53.4
1895 Male, age 76, right hemisphere 49.6
2587 Male, age 74, left hemisphere 41.6
1995 Male, age 72, unknown 41.3
2087 Female, age 72, unknown 38.6
1839 Male, age 51, unknown 37.0
2668 Female, age 75, unknown 34.1
2261 Male, age 18, unknown 33.1
1796 Male, age 53, unknown 30.5
2664 Male, age 75, both hemispheres 27.0
Ventral tegmental area
nTPM: 37.0
2223 Female, age 72, unknown 42.9
2218 Male, age 76, both hemispheres 38.6
2410 Female, age 72, unknown 37.4
2021 Male, age 53, unknown 34.6
1942 Male, age 51, unknown 34.3
1915 Female, age 42, unknown 34.0

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 355.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 355.9
Samples: 139

Max nTPM: 721.0
Min nTPM: 232.6
Std nTPM: 77.2
Median nTPM: 344.5
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 721.0
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 578.3
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 573.4
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 560.8
GTEX-1HSMO-0011-R2a-SM-CL553 60-69 years, male 536.4
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 528.5
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 524.8
GTEX-1H1DG-0011-R2a-SM-ADEIQ 70-79 years, male 511.7
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 496.4
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 484.2
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 478.5
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 1064.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 1064.0
FF:10158-103A5 76 years, female 1064.0

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 224.5
Pig sample Sample description nTPM
Substantia nigra
nTPM: 201.5
Samples: 4

Max nTPM: 237.6
Min nTPM: 183.6
Sample A Female 183.6
Sample B Female 191.8
Sample C Male 193.1
Sample D Male 237.6
Midbrain
nTPM: 215.3
Samples: 4

Max nTPM: 276.0
Min nTPM: 175.6
Sample A Female 276.0
Sample B Female 223.4
Sample C Male 186.2
Sample D Male 175.6
Periaqueductal gray
nTPM: 224.5
Samples: 3

Max nTPM: 229.1
Min nTPM: 219.9
Sample B Female 229.1
Sample C Male 219.9
Sample D Male 224.5
Superior colliculi
nTPM: 190.8
Samples: 4

Max nTPM: 211.9
Min nTPM: 168.8
Sample A Female 187.2
Sample B Female 168.8
Sample C Male 195.3
Sample D Male 211.9

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 350.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 350.1
Samples: 4

Max nTPM: 366.2
Min nTPM: 340.1
Sample A Male 341.5
Sample B Male 352.4
Sample C Female 366.2
Sample D Female 340.1

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.0
71232819 Antisense, RP_050503_02_A04, Mouse strain C57BL/6J (56 days, male) 0.0

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