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A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
45.0
Sample id
Sample description
nTPM
Amygdala nTPM: 14.7
1987
Female, age 91, left hemisphere
38.7
2517
Female, age 94, left hemisphere
19.2
2514
Male, age 75, right hemisphere
11.2
2695
Female, age 67, right hemisphere
2.6
2814
Male, age 76, right hemisphere
1.6
Basal amygdala nTPM: 29.2
2110
Male, age 80, left hemisphere
63.7
1955
Male, age 76, both hemispheres
37.0
2827
Female, age 67, right hemisphere
23.8
2243
Female, age 91, right hemisphere
19.4
2685
Female, age 94, left hemisphere
16.7
2609
Male, age 75, right hemisphere
14.8
Central amygdala nTPM: 29.7
2239
Male, age 80, left hemisphere
80.8
2701
Female, age 91, right hemisphere
33.5
2826
Female, age 94, left hemisphere
23.1
2515
Male, age 75, right hemisphere
10.7
1905
Male, age 76, both hemispheres
0.3
Corticomedial amygdala nTPM: 45.0
2829
Male, age 80, left hemisphere
80.4
2240
Male, age 76, both hemispheres
64.3
2429
Female, age 94, left hemisphere
59.1
2535
Female, age 67, right hemisphere
39.5
2242
Female, age 91, right hemisphere
16.3
2428
Male, age 75, right hemisphere
10.1
Lateral amygdala nTPM: 27.6
2256
Male, age 80, left hemisphere
47.0
2255
Female, age 91, right hemisphere
38.7
1883
Male, age 76, both hemispheres
21.4
2516
Male, age 75, right hemisphere
21.1
2534
Female, age 94, left hemisphere
19.7
2830
Female, age 67, right hemisphere
17.6
AMYGDALA - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
117.0
GTEx sample id
Sample description
nTPM
Brain - Amygdala Average nTPM: 117.0
Samples: 152
Max nTPM: 389.8
Min nTPM: 6.6
Std nTPM: 81.9
Median nTPM: 91.7
GTEX-131XH-0011-R4b-SM-5DUWB
50-59 years, male
389.8
GTEX-1HFI6-0011-R4b-SM-A96RT
40-49 years, male
387.0
GTEX-1313W-0011-R4b-SM-5KLZV
50-59 years, female
377.7
GTEX-T6MN-0011-R4A-SM-32QPG
50-59 years, male
357.5
GTEX-1I1GR-0011-R4a-SM-CMKHC
60-69 years, male
324.6
GTEX-WZTO-0011-R4A-SM-3NMC7
40-49 years, male
314.1
GTEX-15SHU-0011-R4b-SM-7IGLC
40-49 years, female
286.9
GTEX-14JG1-0011-R4b-SM-62LEB
40-49 years, male
285.3
GTEX-11NUK-0011-R4a-SM-DO12B
50-59 years, male
278.9
GTEX-14ABY-0011-R4b-SM-5S2VN
50-59 years, male
270.3
GTEX-14PJM-0011-R4a-SM-5YYAS
50-59 years, female
263.6
GTEX-17EVP-0011-R4a-SM-79OML
40-49 years, male
263.2
GTEX-R55E-0011-R4A-SM-2TC5H
20-29 years, male
240.6
GTEX-13N1W-0011-R4a-SM-5MR52
70-79 years, male
239.9
GTEX-QMR6-0011-R4A-SM-32PKU
50-59 years, male
226.7
GTEX-13NYB-0011-R4b-SM-9QEGJ
40-49 years, male
222.3
GTEX-15DYW-0011-R4a-SM-6M46V
60-69 years, female
217.8
GTEX-1F7RK-0011-R4b-SM-9QEI7
20-29 years, female
217.7
GTEX-131YS-0011-R4a-SM-5DUVL
60-69 years, female
216.2
GTEX-T5JC-0011-R4A-SM-32PLT
20-29 years, male
214.8
GTEX-13OW6-0011-R4a-SM-5O9DX
50-59 years, male
212.9
GTEX-1B996-0011-R4b-SM-9OSVO
60-69 years, male
207.8
GTEX-1B8L1-0011-R4a-SM-7EWFJ
60-69 years, male
205.6
GTEX-13VXU-0011-R4b-SM-5O9CI
50-59 years, male
202.0
GTEX-1GN73-0011-R4b-SM-9QEIK
60-69 years, male
201.4
GTEX-1CB4G-0011-R4b-SM-CJI28
60-69 years, male
200.9
GTEX-WVLH-0011-R4A-SM-3MJFS
50-59 years, male
190.6
GTEX-1C6WA-0011-R4a-SM-9QEH2
60-69 years, male
187.2
GTEX-14E7W-0011-R4b-SM-62LEA
70-79 years, male
183.0
GTEX-13X6J-0011-R4b-SM-5P9K4
50-59 years, male
178.9
GTEX-14JIY-0011-R4b-SM-5ZZV7
60-69 years, male
176.0
GTEX-14ASI-0011-R4a-SM-69LQ4
60-69 years, male
175.6
GTEX-13O3Q-0011-R4a-SM-5P9H2
50-59 years, male
170.5
GTEX-S7SE-0011-R4A-SM-2XCDB
50-59 years, male
167.9
GTEX-1F6IF-0011-R4b-SM-CKZNJ
60-69 years, male
166.2
GTEX-Q2AG-0011-R4A-SM-2HMKA
40-49 years, female
158.9
GTEX-15CHQ-0011-R4a-SM-686ZX
60-69 years, male
156.0
GTEX-11PRG-0011-R4a-SM-DNZZR
50-59 years, male
154.0
GTEX-13O3O-0011-R4b-SM-5KM3F
60-69 years, female
153.9
GTEX-ZAK1-0011-R4a-SM-6AJBK
50-59 years, female
153.0
GTEX-YFC4-0011-R4a-SM-4RGLQ
40-49 years, female
150.8
GTEX-17HG3-0011-R4a-SM-7IGLL
30-39 years, female
150.1
GTEX-15ER7-0011-R4a-SM-6M46S
20-29 years, female
149.6
GTEX-UTHO-0011-R4A-SM-3GIJP
60-69 years, male
146.9
GTEX-X585-0011-R4B-SM-46MVH
50-59 years, male
145.5
GTEX-1AX9I-0011-R4b-SM-7EPIB
60-69 years, male
145.3
GTEX-1LVAO-0011-R4a-SM-EXURO
60-69 years, male
142.2
GTEX-Y8DK-0011-R4A-SM-EXUR1
60-69 years, male
137.4
GTEX-XLM4-0011-R4B-SM-4AT5C
60-69 years, male
135.8
GTEX-13X6I-0011-R4b-SM-5PNU9
60-69 years, male
133.3
GTEX-RNOR-0011-R4A-SM-3GAD3
50-59 years, female
132.3
GTEX-1EMGI-0011-R4b-SM-CJI2D
60-69 years, male
130.9
GTEX-1LSVX-0011-R4b-SM-EXURP
60-69 years, male
130.3
GTEX-1N2EE-0011-R4a-SM-EXOII
60-69 years, male
130.3
GTEX-12WSD-0011-R4b-SM-5LZUA
60-69 years, female
128.3
GTEX-13FLV-0011-R4a-SM-5LZYU
50-59 years, male
127.8
GTEX-1E1VI-0011-R4b-SM-9QEHV
50-59 years, male
123.4
GTEX-N7MS-0011-R4a-SM-2HMKW
60-69 years, male
122.1
GTEX-1399T-0011-R4b-SM-5DUVX
60-69 years, male
119.8
GTEX-1IY9M-0011-R4a-SM-C1YQ2
60-69 years, male
119.3
GTEX-13X6K-0011-R4b-SM-5P9HO
60-69 years, female
117.6
GTEX-13N2G-0011-R4b-SM-5MR54
60-69 years, male
112.9
GTEX-1JJEA-0011-R4a-SM-EXUTC
60-69 years, male
112.9
GTEX-QVJO-0011-R4A-SM-2S1QL
60-69 years, female
112.2
GTEX-1A3MX-0011-R4b-SM-7EWFK
60-69 years, male
110.8
GTEX-11ONC-0011-R4b-SM-DO93H
60-69 years, male
110.5
GTEX-ZAB4-0011-R4a-SM-4SOKB
40-49 years, male
109.5
GTEX-12WSF-0011-R4b-SM-5HL88
70-79 years, male
108.7
GTEX-1H3NZ-0011-R4a-SM-CL54T
60-69 years, male
108.6
GTEX-1J8Q2-0011-R4a-SM-ADEHA
60-69 years, male
101.8
GTEX-14PN4-0011-R4a-SM-686ZT
50-59 years, male
100.0
GTEX-1HBPH-0011-R4a-SM-A96RX
40-49 years, female
99.7
GTEX-QVUS-0011-R4A-SM-3GAE7
60-69 years, female
95.8
GTEX-14JFF-0011-R4a-SM-5ZZV5
60-69 years, male
95.3
GTEX-WHSE-0011-R4A-SM-3P5ZN
20-29 years, male
93.9
GTEX-1GZ4I-0011-R4a-SM-9QEI9
50-59 years, male
92.2
GTEX-16YQH-0011-R4a-SM-7EPGI
30-39 years, male
91.2
GTEX-15EO6-0011-R4a-SM-7KUKZ
50-59 years, male
90.4
GTEX-14PQA-0011-R4b-SM-6AJBU
50-59 years, female
90.1
GTEX-1C6VR-0011-R4b-SM-9QEGZ
60-69 years, male
89.4
GTEX-1F75A-0011-R4a-SM-ARL8J
50-59 years, male
89.4
GTEX-17F97-0011-R4b-SM-7KFS2
50-59 years, male
86.1
GTEX-1HBPI-0011-R4a-SM-CJI3K
50-59 years, male
85.7
GTEX-1H1CY-0011-R4b-SM-CJI3G
60-69 years, female
84.6
GTEX-1GF9W-0011-R4a-SM-CE6RH
60-69 years, male
82.2
GTEX-1N2DW-0011-R4b-SM-EZ6MD
50-59 years, male
80.6
GTEX-1EX96-0011-R4a-SM-ARU82
50-59 years, male
80.1
GTEX-1J1OQ-0011-R4a-SM-D4P2A
40-49 years, female
80.1
GTEX-11ZU8-0011-R4a-SM-5BC6Y
60-69 years, male
80.0
GTEX-13RTJ-0011-R4b-SM-5PNX1
60-69 years, male
78.9
GTEX-145LS-0011-R4b-SM-5S2UT
60-69 years, female
77.9
GTEX-13OW8-0011-R4a-SM-9WG6V
60-69 years, male
77.2
GTEX-13QIC-0011-R4a-SM-5PNX8
60-69 years, female
77.0
GTEX-13JVG-0011-R4a-SM-5MR4C
60-69 years, male
75.9
GTEX-14DAQ-0011-R4a-SM-5YYAI
60-69 years, female
75.5
GTEX-13SLX-0011-R4a-SM-5O9BJ
50-59 years, female
74.6
GTEX-ZE9C-0011-R4a-SM-4WKH6
60-69 years, male
74.0
GTEX-13PVQ-0011-R4a-SM-5O9CT
50-59 years, male
73.2
GTEX-13NYS-0011-R4b-SM-5MR3O
60-69 years, male
72.8
GTEX-1HCU6-0011-R4b-SM-ARU74
60-69 years, female
71.2
GTEX-ZVZQ-0011-R4b-SM-57WCZ
60-69 years, female
71.0
GTEX-13OVL-0011-R4b-SM-5L3HV
50-59 years, male
69.6
GTEX-1H3O1-0011-R4b-SM-A9SKE
60-69 years, male
66.6
GTEX-147GR-0011-R4a-SM-5S2V2
60-69 years, male
66.2
GTEX-13OW7-0011-R4b-SM-5O9CX
50-59 years, male
65.4
GTEX-N7MT-0011-R4a-SM-2I3G9
60-69 years, female
63.5
GTEX-12ZZZ-0011-R4b-SM-5DUV7
60-69 years, male
63.3
GTEX-12WSH-0011-R4a-SM-5GU6K
50-59 years, male
61.9
GTEX-11TTK-0011-R4a-SM-DNZZU
60-69 years, female
61.6
GTEX-NPJ7-0011-R4a-SM-2I3GJ
60-69 years, female
61.1
GTEX-X4XX-0011-R4B-SM-46MWL
60-69 years, male
60.1
GTEX-1GMR8-0011-R4a-SM-9OSX1
50-59 years, female
59.5
GTEX-13112-0011-R4b-SM-5DUXL
50-59 years, male
58.8
GTEX-1HB9E-0011-R4b-SM-ARZLS
50-59 years, male
56.7
GTEX-145MI-0011-R4b-SM-5PNZH
60-69 years, female
54.8
GTEX-1JMQJ-0011-R4b-SM-EXUT8
50-59 years, male
54.7
GTEX-13CZV-0011-R4b-SM-5J2NY
60-69 years, male
52.7
GTEX-1GTWX-0011-R4a-SM-C1YQI
60-69 years, male
52.3
GTEX-P44G-0011-R4A-SM-2I3FB
30-39 years, male
49.5
GTEX-1F48J-0011-R4b-SM-9OSVX
50-59 years, female
48.9
GTEX-183WM-0011-R4a-SM-7LG6S
70-79 years, female
48.8
GTEX-13OVJ-0011-R4b-SM-5P9H5
50-59 years, female
48.1
GTEX-1H1ZS-0011-R4b-SM-CKZO7
70-79 years, male
46.3
GTEX-QDT8-0011-R4A-SM-32PKM
30-39 years, female
45.7
GTEX-14BIM-0011-R4b-SM-5S2RK
60-69 years, female
42.1
GTEX-1H2FU-0011-R4a-SM-CL551
60-69 years, female
41.6
GTEX-NL4W-0011-R4a-SM-2I5GZ
50-59 years, male
38.9
GTEX-144GL-0011-R4a-SM-5PNUI
50-59 years, male
38.8
GTEX-TSE9-0011-R4A-SM-3DB7H
60-69 years, female
38.7
GTEX-17EVQ-0011-R4b-SM-7LT94
70-79 years, male
37.6
GTEX-12WSA-0011-R4a-SM-57WB7
60-69 years, male
37.3
GTEX-1H23P-0011-R4b-SM-CL54R
60-69 years, male
36.7
GTEX-P44H-0011-R4A-SM-2XCEW
40-49 years, male
36.3
GTEX-1J8EW-0011-R4b-SM-ARU89
60-69 years, female
35.4
GTEX-18464-0011-R4a-SM-7LG6T
50-59 years, male
33.3
GTEX-NL3H-0011-R4a-SM-2I3GK
60-69 years, male
33.0
GTEX-1445S-0011-R4a-SM-5PNWN
60-69 years, male
32.4
GTEX-15DDE-0011-R4b-SM-7KULI
50-59 years, female
32.3
GTEX-13OW5-0011-R4b-SM-5L3HS
60-69 years, male
32.0
GTEX-13SLW-0011-R4b-SM-5S2W2
70-79 years, male
31.8
GTEX-15DCD-0011-R4a-SM-69LPB
70-79 years, female
31.2
GTEX-13OVH-0011-R4a-SM-5KM3W
70-79 years, male
31.0
GTEX-NPJ8-0011-R4a-SM-2HML3
40-49 years, male
30.7
GTEX-1H1DG-0011-R4a-SM-CE6RQ
70-79 years, male
30.2
GTEX-12ZZW-0011-R4a-SM-5DUX9
50-59 years, male
29.6
GTEX-1ICLZ-0011-R4a-SM-CMKHL
60-69 years, male
28.2
GTEX-139T8-0011-R4a-SM-5HL54
60-69 years, male
27.6
GTEX-OHPN-0011-R4A-SM-2I5FD
60-69 years, female
26.6
GTEX-1JN6P-0011-R4a-SM-EZ6MS
60-69 years, male
23.1
GTEX-1CB4J-0011-R4b-SM-9WG5P
60-69 years, male
20.2
GTEX-11ZVC-0011-R4a-SM-5BC6Z
50-59 years, female
15.5
GTEX-X4EP-0011-R4B-SM-3P627
60-69 years, female
6.6
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AMYGDALA - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
362.1
Mouse sample
Sample description
nTPM
Amygdala nTPM: 362.1
Samples: 4
Max nTPM: 486.1
Min nTPM: 294.7
Sample A
Male
294.7
Sample B
Male
333.5
Sample C
Female
486.1
Sample D
Female
334.2
AMYGDALA - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.
The Human Protein Atlas project is funded
