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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:908.3 nTPM
HPA Brain:229.4 nTPM
GTEx:908.3 nTPM
FANTOM5:195.6 Scaled Tags Per Million
Pig:44.9 nTPM
Mouse:289.1 nTPM
Allen mouse:4.9 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

229.4
Sample id Sample description nTPM
Amygdala
nTPM: 229.4
2695 Female, age 67, right hemisphere 306.0
2514 Male, age 75, right hemisphere 233.6
2814 Male, age 76, right hemisphere 206.8
2517 Female, age 94, left hemisphere 205.0
1987 Female, age 91, left hemisphere 195.5
Basal amygdala
nTPM: 182.9
2827 Female, age 67, right hemisphere 242.4
2110 Male, age 80, left hemisphere 185.3
2609 Male, age 75, right hemisphere 182.7
1955 Male, age 76, both hemispheres 167.2
2685 Female, age 94, left hemisphere 160.7
2243 Female, age 91, right hemisphere 159.3
Central amygdala
nTPM: 208.4
2826 Female, age 94, left hemisphere 314.6
2515 Male, age 75, right hemisphere 229.1
1905 Male, age 76, both hemispheres 175.6
2239 Male, age 80, left hemisphere 170.1
2701 Female, age 91, right hemisphere 152.5
Corticomedial amygdala
nTPM: 176.8
2428 Male, age 75, right hemisphere 198.5
2240 Male, age 76, both hemispheres 185.9
2535 Female, age 67, right hemisphere 178.6
2829 Male, age 80, left hemisphere 175.5
2242 Female, age 91, right hemisphere 162.9
2429 Female, age 94, left hemisphere 159.3
Lateral amygdala
nTPM: 217.9
2830 Female, age 67, right hemisphere 327.0
2516 Male, age 75, right hemisphere 262.3
2534 Female, age 94, left hemisphere 241.3
1883 Male, age 76, both hemispheres 170.7
2256 Male, age 80, left hemisphere 164.0
2255 Female, age 91, right hemisphere 142.0

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

908.3
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 908.3
Samples: 152

Max nTPM: 2720.8
Min nTPM: 461.5
Std nTPM: 363.0
Median nTPM: 826.8
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 2720.8
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 2433.5
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 2216.4
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 2065.5
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 1913.3
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 1863.9
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 1749.1
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 1737.6
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 1647.0
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 1498.2
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 1331.4
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 1299.2
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 1287.7
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 1274.6
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 1269.9
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 1257.6
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 1257.6
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 1235.5
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 1230.9
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 1202.0
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 1197.6
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 1187.6
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 1180.0
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 1176.5
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 1153.7
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 1146.6
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 1139.9
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 1125.6
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 1117.7
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 1104.0
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 1097.1
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 1088.5
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 1078.8
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 1042.0
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 1026.4
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 1025.3
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 1023.3
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 1022.1
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 1011.1
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 996.1
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 994.6
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 986.7
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 981.5
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 971.2
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 970.8
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 967.2
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 961.8
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 945.2
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 945.1
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 944.8
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 941.7
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 937.3
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 924.4
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 917.2
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 914.4
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 913.1
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 913.1
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 911.6
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 911.1
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 907.6
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 905.3
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 894.2
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 889.0
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 888.9
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 882.1
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 879.0
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 872.5
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 869.8
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 851.6
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 851.3
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 848.9
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 839.7
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 833.9
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 833.8
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 827.9
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 827.1
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 826.6
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 820.2
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 810.7
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 810.7
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 803.7
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 796.8
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 792.7
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 785.6
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 778.6
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 777.7
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 773.1
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 771.3
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 770.5
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 767.7
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 767.1
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 759.6
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 757.8
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 756.7
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 756.1
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 756.0
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 752.7
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 749.2
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 742.2
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 741.6
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 739.3
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 732.9
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 728.2
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 727.2
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 725.2
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 722.6
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 698.6
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 695.4
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 692.5
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 692.0
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 691.2
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 682.8
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 682.7
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 681.7
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 680.9
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 677.4
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 674.9
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 670.0
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 668.1
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 667.8
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 658.4
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 655.5
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 655.1
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 651.8
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 646.8
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 640.2
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 637.0
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 632.0
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 627.6
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 624.1
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 623.3
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 620.3
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 613.5
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 608.2
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 601.5
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 575.3
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 571.6
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 570.1
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 568.1
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 549.7
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 546.8
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 534.8
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 528.4
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 520.1
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 517.3
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 516.3
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 503.4
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 498.8
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 493.2
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 486.4
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 481.4
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 461.5
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

195.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 195.6
FF:10151-102I7 76 years, female 195.6

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

44.9
Pig sample Sample description nTPM
Amygdala
nTPM: 44.9
Samples: 4

Max nTPM: 55.4
Min nTPM: 31.5
Sample A Female 55.4
Sample B Female 47.2
Sample C Male 45.3
Sample D Male 31.5

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

289.1
Mouse sample Sample description nTPM
Amygdala
nTPM: 289.1
Samples: 4

Max nTPM: 314.8
Min nTPM: 261.6
Sample A Male 261.6
Sample B Male 306.0
Sample C Female 314.8
Sample D Female 274.0

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

4.9
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 4.9
68498271 Antisense, RP_050113_01_F04, Mouse strain C57BL/6J (56 days, male) 4.9

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