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BRAIN RETINA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
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Retina
RETINA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:360.3 nTPM
GTEx:360.3 nTPM
FANTOM5:206.8 Scaled Tags Per Million
Pig:27.4 nTPM
Mouse:471.6 nTPM

RETINA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

360.3
GTEx sample id Sample description nTPM
Retina
Average nTPM: 360.3
Samples: 105

Max nTPM: 489.4
Min nTPM: 234.6
Std nTPM: 51.1
Median nTPM:
153_1 70 years, female 489.4
35_1 74 years, female 478.3
246_1 77 years, male 469.1
322_1 76 years, male 455.5
17_1 71 years, male 453.7
379_1 60 years, male 443.0
447_1 81 years, male 442.9
384_1 83 years, male 442.8
377_1 82 years, female 435.7
375_1 74 years, female 433.9
389_1 86 years, female 433.5
2_1 77 years, female 431.9
189_1 76 years, male 430.8
321_1 62 years, female 428.8
319_1 81 years, male 428.6
120_1 70 years, female 424.4
404_1 82 years, female 419.5
126_1 63 years, male 418.2
526_1 61 years, male 412.6
396_1 62 years, male 408.9
4_1 88 years, female 403.2
452_1 88 years, female 402.5
145_1 84 years, male 400.9
237_1 82 years, male 397.2
315_1 62 years, female 395.2
405_1 91 years, male 391.7
139_1 64 years, female 391.4
218_1 71 years, female 390.5
394_1 75 years, female 389.2
173_1 67 years, male 387.7
414_1 84 years, female 387.5
307_1 66 years, female 384.0
109_1 81 years, female 383.7
6_1 73 years, female 382.7
320_1 89 years, female 379.9
137_1 83 years, male 379.5
265_1 87 years, male 377.0
266_1 85 years, male 376.7
386_1 76 years, male 373.5
243_1 75 years, male 371.5
142_1 61 years, female 371.4
162_1 79 years, female 370.4
376_1 75 years, female 370.4
355_1 70 years, female 368.6
254_1 77 years, female 366.0
518_1 75 years, female 364.5
317_1 60 years, male 364.3
229_1 69 years, female 364.1
347_1 72 years, male 363.5
318_1 68 years, male 360.2
18_1 88 years, male 358.2
468_1 89 years, male 358.1
177_1 74 years, male 356.0
308_1 70 years, female 353.2
316_1 62 years, male 353.2
503_1 68 years, male 353.1
311_1 78 years, male 353.0
354_1 81 years, female 349.6
42_1 85 years, male 349.5
495_1 57 years, female 349.3
324_1 76 years, male 347.3
217_1 76 years, male 347.0
335_1 73 years, female 344.6
119_1 70 years, female 341.8
295_1 61 years, female 338.6
163_1 78 years, male 336.5
415_1 77 years, female 336.3
99_1 64 years, male 335.0
115_1 83 years, male 334.6
172_1 72 years, female 334.5
251_1 78 years, male 332.7
351_1 91 years, male 330.0
406_1 79 years, male 329.6
288_1 66 years, female 328.9
286_1 68 years, female 327.5
499_1 55 years, female 326.0
352_1 62 years, male 325.9
349_1 83 years, male 325.8
413_1 59 years, female 321.1
313_1 79 years, female 319.9
425_1 59 years, female 317.2
117_1 61 years, male 317.0
353_1 82 years, female 316.9
41_1 94 years, female 316.1
291_1 76 years, male 314.0
506_1 65 years, male 313.1
480_1 63 years, male 310.9
356_1 87 years, female 310.1
292_1 71 years, male 308.8
81_1 67 years, male 307.5
293_1 68 years, female 306.8
89_1 63 years, male 305.8
517_1 88 years, male 305.4
348_1 84 years, male 304.0
501_1 88 years, male 304.0
350_1 84 years, female 301.8
466_1 57 years, female 294.2
264_1 73 years, female 292.9
32_1 67 years, male 291.6
9_1 66 years, female 291.3
314_1 67 years, male 286.3
491_1 89 years, female 284.7
43_1 64 years, female 266.0
149_1 88 years, male 244.3
490_1 67 years, female 234.6
Show allShow less

RETINA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

206.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Retina
Scaled Tags Per Million: 206.8
FF:10030-101E3 24-65 years, mixed 206.8

RETINA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

27.4
Pig sample Sample description nTPM
Retina
nTPM: 27.4
Samples: 4

Max nTPM: 29.9
Min nTPM: 25.6
Sample A Female 27.0
Sample B Female 29.9
Sample C Male 27.1
Sample D Male 25.6

RETINA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

471.6
Mouse sample Sample description nTPM
Retina
nTPM: 471.6
Samples: 4

Max nTPM: 519.0
Min nTPM: 396.6
Sample A Male 501.3
Sample B Male 396.6
Sample C Female 519.0
Sample D Female 469.5

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