We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
TUBA1B
HPA
RESOURCES
  • TISSUE
  • BRAIN
  • SINGLE CELL
  • SUBCELLULAR
  • CANCER
  • BLOOD
  • CELL LINE
  • STRUCTURE & INTERACTION
ABOUT
  • INTRODUCTION
  • HISTORY
  • ORGANIZATION
  • PUBLICATIONS
  • ANTIBODY SUBMISSION
  • ANTIBODY AVAILABILITY
  • ACKNOWLEDGMENTS
  • CONTACT
NEWS
  • NEWS ARTICLES
  • PRESS ROOM
LEARN
  • DICTIONARY
  • PROTEIN CLASSES
  • PROTEIN EVIDENCE
  • METHODS
  • EDUCATIONAL VIDEOS
DATA
  • DOWNLOADABLE DATA
  • PUBLICATION DATA
  • RELEASE HISTORY
HELP
  • ANTIBODY VALIDATION
  • ASSAYS & ANNOTATION
  • DISCLAIMER
  • HELP & FAQ
  • PRIVACY STATEMENT
  • LICENCE & CITATION
Fields »
Search result

Field
Term
Gene name
Class
Subclass
Class
Keyword
Chromosome
External id
Tissue
Cell type
Expression
Antibody panel
Tissue
Main location
Patient ID
Annotation
Tissue
Category
Tau score
Cluster
Reliability
Brain region
Category
Tau score
Brain region
Category
Tau score
Brain region
Category
Tau score
Cluster
Reliability
Tissue
Cell type
Enrichment
Cell type
Category
Tau score
Cell type
Category
Tau score
Cell type
Category
Tau score
Cell lineage
Category
Tau score
Cluster
Cluster
Location
Searches
Location
Cell line
Class
Type
Phase
Reliability
Cancer
Prognosis
Cancer
Category
Cancer
Category
Tau score
Cluster
Variants
Interacting gene (ensg_id)
Type
Number of interactions
Pathway
Category
Score
Score
Score
Validation
Validation
Validation
Validation
Antibodies
Data type
Column


  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • SUBCELL

  • CANCER

  • BLOOD

  • CELL LINE

  • STRUCT & INT

  • TUBA1B
TISSUE PRIMARY DATA AMYGDALA Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Tissue proteome
Amygdala
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:1088.2 nTPM
HPA Brain:800.3 nTPM
GTEx:1088.2 nTPM
FANTOM5:1438.1 Scaled Tags Per Million
Pig:489.8 nTPM
Mouse:1073.5 nTPM
Allen mouse:32.1 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

800.3
Sample id Sample description nTPM
Amygdala
nTPM: 745.8
2814 Male, age 76, right hemisphere 989.4
2695 Female, age 67, right hemisphere 748.6
1987 Female, age 91, left hemisphere 738.1
2514 Male, age 75, right hemisphere 633.8
2517 Female, age 94, left hemisphere 619.1
Basal amygdala
nTPM: 642.2
2685 Female, age 94, left hemisphere 729.9
1955 Male, age 76, both hemispheres 698.8
2243 Female, age 91, right hemisphere 693.8
2110 Male, age 80, left hemisphere 595.9
2827 Female, age 67, right hemisphere 576.7
2609 Male, age 75, right hemisphere 558.1
Central amygdala
nTPM: 800.3
1905 Male, age 76, both hemispheres 974.7
2826 Female, age 94, left hemisphere 970.4
2239 Male, age 80, left hemisphere 742.4
2515 Male, age 75, right hemisphere 694.3
2701 Female, age 91, right hemisphere 619.9
Corticomedial amygdala
nTPM: 614.8
2240 Male, age 76, both hemispheres 716.3
2429 Female, age 94, left hemisphere 652.2
2242 Female, age 91, right hemisphere 611.1
2829 Male, age 80, left hemisphere 596.3
2428 Male, age 75, right hemisphere 557.9
2535 Female, age 67, right hemisphere 555.0
Lateral amygdala
nTPM: 750.8
2534 Female, age 94, left hemisphere 1101.5
1883 Male, age 76, both hemispheres 915.1
2830 Female, age 67, right hemisphere 723.6
2256 Male, age 80, left hemisphere 685.0
2516 Male, age 75, right hemisphere 567.7
2255 Female, age 91, right hemisphere 512.0

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1088.2
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 1088.2
Samples: 152

Max nTPM: 3998.4
Min nTPM: 208.3
Std nTPM: 627.0
Median nTPM: 934.4
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 3998.4
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 3970.9
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 2946.1
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 2505.8
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 2335.2
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 2206.1
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 2158.1
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 2145.7
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 2088.2
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 2015.0
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 1999.8
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 1964.5
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 1955.9
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 1938.7
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 1844.4
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 1826.4
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 1766.2
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 1763.5
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 1752.1
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 1744.5
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 1743.8
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 1730.2
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 1704.3
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 1704.3
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 1693.5
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 1678.9
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 1663.0
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 1640.7
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 1604.7
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 1591.6
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 1591.6
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 1584.0
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 1567.8
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 1562.3
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 1548.7
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 1519.1
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 1476.4
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 1468.0
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 1427.0
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 1399.7
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 1384.4
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 1380.7
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 1363.1
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 1303.4
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 1303.1
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 1279.7
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 1251.7
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 1242.2
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 1230.3
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 1223.1
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 1204.7
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 1203.1
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 1182.2
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 1178.3
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 1176.6
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 1173.8
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 1167.5
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 1156.7
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 1141.5
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 1137.1
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 1136.0
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 1105.1
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 1102.6
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 1086.0
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 1078.0
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 1076.1
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 1062.8
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 1047.3
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 1008.2
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 966.0
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 962.5
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 961.7
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 955.5
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 952.4
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 948.2
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 936.6
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 932.2
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 896.0
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 863.2
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 863.1
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 855.5
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 850.8
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 848.4
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 839.5
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 832.6
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 828.7
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 826.2
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 826.0
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 825.0
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 822.7
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 819.8
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 817.7
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 807.1
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 804.7
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 792.9
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 792.4
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 790.1
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 782.0
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 774.1
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 756.6
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 742.6
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 731.7
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 726.6
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 699.2
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 698.1
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 687.7
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 678.4
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 672.0
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 671.2
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 654.9
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 651.7
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 647.1
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 645.2
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 642.1
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 638.7
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 614.9
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 613.9
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 592.2
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 590.7
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 585.4
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 583.0
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 579.0
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 574.4
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 563.9
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 553.8
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 552.9
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 552.4
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 506.4
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 503.7
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 499.4
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 497.0
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 493.8
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 492.9
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 489.9
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 484.0
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 466.3
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 455.8
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 455.6
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 455.2
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 440.1
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 435.2
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 433.6
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 429.6
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 419.3
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 373.3
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 359.6
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 355.1
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 343.1
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 320.4
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 309.9
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 287.4
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 208.3
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

1438.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 1438.1
FF:10151-102I7 76 years, female 1438.1

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

489.8
Pig sample Sample description nTPM
Amygdala
nTPM: 489.8
Samples: 4

Max nTPM: 571.2
Min nTPM: 351.1
Sample A Female 571.2
Sample B Female 488.0
Sample C Male 548.9
Sample D Male 351.1

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1073.5
Mouse sample Sample description nTPM
Amygdala
nTPM: 1073.5
Samples: 4

Max nTPM: 1179.4
Min nTPM: 996.8
Sample A Male 1179.4
Sample B Male 1076.9
Sample C Female 996.8
Sample D Female 1040.9

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

32.1
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 32.1
77465048 Antisense, RP_070129_03_A07, Mouse strain C57BL/6J (56 days, male) 32.1

Contact

  • NEWS ARTICLES
  • PRESS ROOM

The Project

  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS

The Human Protein Atlas

  • DOWNLOADABLE DATA
  • LICENCE & CITATION
  • HELP & FAQ
The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.


contact@proteinatlas.org