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TUBA1B
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TISSUE PRIMARY DATA SMALL INTESTINE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Small intestine
Tissue proteome
Intestine
SMALL INTESTINE - Expression summary
Protein expression
Small intestinei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glandular cells: High
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:342.5 nTPM
HPA:335.7 nTPM
GTEx:342.5 nTPM
FANTOM5:957.2 Scaled Tags Per Million

SMALL INTESTINE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA039247Antibody HPA043684Antibody HPA063394Antibody CAB011513
Glandular cells HighMediumMediumLow








SMALL INTESTINE - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Average nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

335.7
overview
Male, age 65
Small intestine sample 232
nTPM: 273.5
Cell types%
Glandular cells:
55

Smooth muscle cells:
5

Other cell types:
40

overview
Male, age 39
Small intestine sample 233
nTPM: 309.6
Cell types%
Glandular cells:
40

Smooth muscle cells:
5

Other cell types:
55

overview
Male, age 68
Small intestine sample 234
nTPM: 395.5
Cell types%
Glandular cells:
30

Smooth muscle cells:
15

Other cell types:
55

N/A
Male, age 85
Small intestine sample 235
nTPM: 364.2

SMALL INTESTINE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

342.5
GTEx sample id Sample description nTPM
Small Intestine - Terminal Ileum
Average nTPM: 342.5
Samples: 187

Max nTPM: 863.3
Min nTPM: 138.2
Std nTPM: 133.6
Median nTPM: 322.4
GTEX-13W3W-2026-SM-5K7UL 60-69 years, female 863.3
GTEX-1CAMS-2426-SM-7DHMV 40-49 years, female 838.8
GTEX-WFG8-1626-SM-4LVMB 20-29 years, male 799.4
GTEX-Y5LM-1626-SM-4VDTB 40-49 years, female 713.1
GTEX-14PKV-2026-SM-6AJ9A 20-29 years, female 683.8
GTEX-UPK5-2026-SM-4JBIM 40-49 years, male 659.3
GTEX-XMK1-1826-SM-4B66F 40-49 years, male 649.5
GTEX-13X6H-1826-SM-7EWCZ 50-59 years, female 642.4
GTEX-1JK1U-1226-SM-CNNPN 60-69 years, male 613.4
GTEX-XGQ4-1326-SM-4GIDU 50-59 years, male 612.7
GTEX-16NGA-1126-SM-7KFSY 40-49 years, female 577.5
GTEX-WHSB-1026-SM-4M1XN 50-59 years, male 571.8
GTEX-117YX-0326-SM-5GICL 50-59 years, male 549.1
GTEX-17KNJ-1626-SM-718AL 50-59 years, male 544.7
GTEX-13FTW-2026-SM-5IJE2 40-49 years, male 533.3
GTEX-1OKEX-1126-SM-DTXEB 60-69 years, male 512.3
GTEX-131XE-0926-SM-5HL7J 50-59 years, male 511.9
GTEX-14BMU-1426-SM-5TDE5 20-29 years, female 508.2
GTEX-133LE-1426-SM-5IFH1 20-29 years, female 506.6
GTEX-1KXAM-2026-SM-DHXKI 60-69 years, male 498.7
GTEX-1NSGN-2126-SM-DPRYN 50-59 years, male 486.4
GTEX-1AX8Z-2526-SM-731E3 60-69 years, male 480.7
GTEX-13NYB-1826-SM-5J1N3 40-49 years, male 480.0
GTEX-Y3IK-1726-SM-4YCCR 50-59 years, female 478.4
GTEX-1K9T9-2726-SM-D4P3E 50-59 years, female 475.5
GTEX-1PIEJ-1526-SM-E6CP8 20-29 years, female 474.3
GTEX-ZPIC-2326-SM-57WDW 40-49 years, female 470.2
GTEX-1R9K5-2026-SM-E6CPS 50-59 years, male 468.6
GTEX-14PJ6-1726-SM-6AJBN 60-69 years, female 455.2
GTEX-13RTK-0826-SM-5Q5C6 20-29 years, male 452.8
GTEX-145LT-1026-SM-5LU9O 40-49 years, male 448.2
GTEX-14DAR-1426-SM-5RQIR 50-59 years, male 446.5
GTEX-111CU-1326-SM-5NQ8L 50-59 years, male 444.4
GTEX-1I1GT-1826-SM-ARZLW 60-69 years, female 442.9
GTEX-144GM-1026-SM-79OKU 20-29 years, male 442.7
GTEX-14PK6-1626-SM-6871I 70-79 years, female 438.1
GTEX-11P82-0826-SM-5P9GU 20-29 years, male 435.5
GTEX-13111-1426-SM-5DUW3 50-59 years, male 433.1
GTEX-ZVT2-2126-SM-5NQ93 50-59 years, female 431.1
GTEX-YFCO-1326-SM-664NV 40-49 years, male 429.4
GTEX-1GL5R-2026-SM-7MKHP 50-59 years, male 429.2
GTEX-WYJK-1526-SM-4ONCW 50-59 years, male 428.2
GTEX-11LCK-1926-SM-5A5KE 30-39 years, male 423.9
GTEX-14PJ3-1326-SM-664O7 50-59 years, male 422.9
GTEX-18A66-2526-SM-7KFTZ 60-69 years, male 422.3
GTEX-WEY5-1526-SM-4LMJF 40-49 years, female 421.0
GTEX-WFON-1526-SM-4LVMP 40-49 years, male 417.3
GTEX-131XG-1726-SM-5LZUR 50-59 years, female 413.6
GTEX-1L5NE-1826-SM-EV79T 50-59 years, male 413.5
GTEX-ZTPG-2626-SM-57WFX 20-29 years, female 413.0
GTEX-XXEK-1026-SM-4BRUW 50-59 years, male 409.9
GTEX-1CB4F-1826-SM-7MGXI 60-69 years, male 409.2
GTEX-ZF2S-1726-SM-57WFT 50-59 years, female 407.4
GTEX-139YR-2226-SM-5IFFW 50-59 years, male 404.9
GTEX-1QW4Y-1226-SM-EWRMY 30-39 years, male 402.9
GTEX-1OJC3-1626-SM-E9U65 20-29 years, male 402.6
GTEX-1C475-1426-SM-793CH 40-49 years, female 396.6
GTEX-1IKOE-1926-SM-ARU7V 30-39 years, female 392.9
GTEX-Y3I4-1326-SM-4TT8Z 50-59 years, male 386.5
GTEX-17MFQ-1026-SM-7KFSZ 20-29 years, male 384.9
GTEX-1RAZA-1826-SM-DTXA2 20-29 years, male 383.2
GTEX-14C39-1826-SM-5ZZW4 40-49 years, male 382.7
GTEX-ZA64-1226-SM-5HL7B 20-29 years, male 382.4
GTEX-ZP4G-1626-SM-57WGD 20-29 years, female 380.8
GTEX-ZQUD-0926-SM-57WE3 30-39 years, male 379.7
GTEX-1S82Z-1826-SM-E9TIK 30-39 years, female 377.0
GTEX-15G1A-1726-SM-6LPI4 30-39 years, male 368.6
GTEX-X15G-1426-SM-4PQZK 50-59 years, female 367.4
GTEX-Z9EW-0926-SM-5CVMM 40-49 years, male 367.4
GTEX-1C64O-2526-SM-79ONO 60-69 years, male 366.8
GTEX-1JMQK-2426-SM-CXZJU 60-69 years, male 364.4
GTEX-12WSK-1526-SM-5CVNO 40-49 years, female 363.7
GTEX-1R9PM-1626-SM-DPRY9 20-29 years, male 362.2
GTEX-XPVG-1726-SM-4B65W 50-59 years, male 362.1
GTEX-1R7EV-1226-SM-DTX82 40-49 years, male 359.7
GTEX-XAJ8-0526-SM-47JYK 40-49 years, male 357.5
GTEX-11TUW-1926-SM-5BC58 60-69 years, male 356.5
GTEX-1399R-2026-SM-5K7WN 30-39 years, male 355.8
GTEX-14XAO-1926-SM-6ETZO 60-69 years, female 353.4
GTEX-ZAB5-1526-SM-5HL9P 50-59 years, male 352.2
GTEX-1B8KZ-1126-SM-7IGLX 50-59 years, male 351.8
GTEX-1192X-2526-SM-59868 50-59 years, male 351.6
GTEX-XUZC-1426-SM-4BRV3 30-39 years, female 348.3
GTEX-1MUQO-2426-SM-EAZ5A 60-69 years, male 348.2
GTEX-ZYFG-2026-SM-5E43Y 60-69 years, female 346.0
GTEX-ZEX8-1826-SM-57WBH 50-59 years, male 340.6
GTEX-ZVP2-1726-SM-5GU5P 50-59 years, male 340.4
GTEX-ZG7Y-1926-SM-DNZZ5 50-59 years, male 335.5
GTEX-145ME-0926-SM-5O9AR 40-49 years, female 332.5
GTEX-1H11D-2526-SM-9JGGU 40-49 years, male 332.0
GTEX-11NSD-1726-SM-5N9C3 20-29 years, male 329.5
GTEX-X5EB-1626-SM-4E3IV 40-49 years, male 325.0
GTEX-Y111-2226-SM-4SOJB 50-59 years, male 322.6
GTEX-1EMGI-2826-SM-7IGMR 60-69 years, male 322.4
GTEX-1J8QM-1026-SM-C1YQA 60-69 years, female 320.4
GTEX-1QCLZ-2126-SM-EWRNC 60-69 years, female 319.4
GTEX-Y5V5-1826-SM-4VDS5 60-69 years, female 316.2
GTEX-1CAMR-0826-SM-7MKFK 20-29 years, male 313.7
GTEX-183FY-1626-SM-793D8 20-29 years, male 312.8
GTEX-16AAH-1426-SM-7KFTR 50-59 years, male 311.6
GTEX-13D11-0726-SM-5LZZB 50-59 years, female 311.0
GTEX-1BAJH-2526-SM-7IGOT 70-79 years, male 310.4
GTEX-ZTX8-0526-SM-59HLD 20-29 years, male 309.5
GTEX-Y9LG-1626-SM-5IFHM 30-39 years, male 304.6
GTEX-1LH75-1926-SM-DIPGD 50-59 years, female 299.5
GTEX-ZLWG-1626-SM-DNZZ1 50-59 years, female 297.7
GTEX-1JN76-1126-SM-C1YRL 20-29 years, female 296.9
GTEX-YB5E-1526-SM-5IFIE 40-49 years, male 296.6
GTEX-1R9JW-1926-SM-EVR4J 30-39 years, female 296.4
GTEX-XBED-1426-SM-4AT4G 60-69 years, male 294.4
GTEX-VJYA-0926-SM-4KL1N 60-69 years, male 291.3
GTEX-WQUQ-2426-SM-4MVNW 60-69 years, male 286.7
GTEX-ZZ64-0526-SM-5GZXM 20-29 years, male 286.5
GTEX-ZLV1-1126-SM-4WWBW 60-69 years, female 284.2
GTEX-16A39-1426-SM-6LLI6 30-39 years, female 280.9
GTEX-1H1DE-1426-SM-9JGHV 20-29 years, male 280.7
GTEX-131XF-1326-SM-5GCMQ 60-69 years, male 280.5
GTEX-ZQG8-2526-SM-57WEQ 60-69 years, female 280.4
GTEX-14PKU-1626-SM-6871C 40-49 years, female 276.4
GTEX-ZXES-1526-SM-5NQ95 30-39 years, female 272.2
GTEX-13CF3-1226-SM-5LZXN 60-69 years, female 271.5
GTEX-13QBU-1926-SM-5IJEW 40-49 years, female 270.9
GTEX-1MGNQ-2326-SM-EV7BG 40-49 years, male 269.7
GTEX-Y114-1426-SM-4TT6W 50-59 years, female 265.5
GTEX-1RAZQ-2226-SM-DPRZR 30-39 years, male 265.5
GTEX-11EQ9-1326-SM-5985X 30-39 years, male 263.6
GTEX-139T6-1026-SM-5IJGC 50-59 years, male 260.5
GTEX-11DXX-1626-SM-5H11H 60-69 years, female 258.1
GTEX-13O21-1026-SM-5IJDU 50-59 years, male 252.5
GTEX-1S5ZA-1326-SM-EV7BB 20-29 years, male 252.1
GTEX-1RAZR-1826-SM-E6CRE 40-49 years, male 250.0
GTEX-WRHK-1026-SM-4MVOD 20-29 years, female 249.6
GTEX-1GMR2-1026-SM-7MKHJ 50-59 years, male 247.3
GTEX-1LBAC-1526-SM-CXZKU 20-29 years, male 246.8
GTEX-VUSG-1726-SM-4KKZL 50-59 years, male 246.3
GTEX-ZDTT-1726-SM-5HL69 60-69 years, male 243.9
GTEX-148VJ-2226-SM-5NQ9M 70-79 years, male 243.6
GTEX-13113-1226-SM-5EGHT 60-69 years, female 240.9
GTEX-YEC4-1726-SM-4W21E 40-49 years, male 240.7
GTEX-1R9K4-2326-SM-E6CRB 60-69 years, male 240.7
GTEX-15DZA-0826-SM-6AJBF 30-39 years, female 240.4
GTEX-17HHE-1726-SM-79OKT 50-59 years, male 239.8
GTEX-WFG7-1726-SM-4LVME 20-29 years, male 237.3
GTEX-15EU6-1826-SM-7PC1W 50-59 years, male 234.4
GTEX-1R7EU-1326-SM-E6CQ6 60-69 years, male 233.0
GTEX-16MTA-1526-SM-6LPJB 50-59 years, male 231.0
GTEX-14PN3-2026-SM-68729 60-69 years, female 229.5
GTEX-ZPCL-1726-SM-57WEO 60-69 years, female 229.3
GTEX-ZC5H-2326-SM-4WAYT 40-49 years, female 228.1
GTEX-1AMFI-1926-SM-731F2 50-59 years, female 226.9
GTEX-WFJO-0926-SM-4LVM2 30-39 years, male 226.5
GTEX-14E6E-1626-SM-5RQI7 30-39 years, male 225.5
GTEX-11I78-1126-SM-5A5K5 50-59 years, female 223.6
GTEX-11DXZ-1326-SM-5H11X 50-59 years, male 222.3
GTEX-14PJN-0826-SM-686ZL 30-39 years, male 219.7
GTEX-1399U-2126-SM-5IFEZ 50-59 years, female 219.2
GTEX-13OVI-1926-SM-5IJCG 60-69 years, female 217.3
GTEX-WH7G-1626-SM-4LVMY 40-49 years, male 216.9
GTEX-1399S-2026-SM-5KM4B 30-39 years, female 213.7
GTEX-ZTSS-0926-SM-59865 40-49 years, male 211.6
GTEX-1122O-1326-SM-5H11F 60-69 years, female 211.0
GTEX-13FH7-1226-SM-5IJFK 50-59 years, female 209.3
GTEX-1LGOU-1426-SM-D3L8N 20-29 years, female 208.2
GTEX-ZF29-1626-SM-4WKFJ 60-69 years, female 208.1
GTEX-11P7K-1626-SM-5GU63 30-39 years, male 202.1
GTEX-WY7C-1826-SM-4ONCE 50-59 years, male 202.1
GTEX-11XUK-1426-SM-5EQMG 40-49 years, female 198.5
GTEX-13PL7-2626-SM-5IFH4 60-69 years, female 195.8
GTEX-1QPFJ-2626-SM-DPRZU 30-39 years, female 195.6
GTEX-13O61-1326-SM-5KM31 60-69 years, male 194.1
GTEX-1QP2A-2426-SM-EXOJA 50-59 years, male 191.4
GTEX-18QFQ-1626-SM-72D7H 30-39 years, male 190.9
GTEX-ZVZP-1826-SM-5GZXB 50-59 years, male 188.4
GTEX-1F75I-2526-SM-9WPOZ 40-49 years, male 186.4
GTEX-1PDJ9-1826-SM-E9U66 20-29 years, male 184.9
GTEX-1JJE9-2226-SM-CXZJM 70-79 years, male 182.8
GTEX-111YS-1426-SM-5GID8 60-69 years, male 182.3
GTEX-YF7O-1826-SM-5IFIU 50-59 years, male 180.7
GTEX-11VI4-1626-SM-5EQKO 40-49 years, female 178.6
GTEX-ZLFU-1526-SM-4WWBT 40-49 years, male 170.0
GTEX-1B8KE-1726-SM-7IGMN 50-59 years, male 167.7
GTEX-1HSMQ-2226-SM-C1YRD 50-59 years, male 162.3
GTEX-1GMR3-2726-SM-7MKFB 40-49 years, male 155.2
GTEX-1QP28-1726-SM-E6CRK 50-59 years, female 152.6
GTEX-12BJ1-1926-SM-5HL9Z 60-69 years, male 149.7
GTEX-1497J-1926-SM-5TDCC 60-69 years, male 146.9
GTEX-1J8Q3-2526-SM-CNNQ4 60-69 years, male 138.2
Show allShow less

SMALL INTESTINE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

957.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Small intestine
Scaled Tags Per Million: 957.2
FF:10024-101D6 15,40,85 years, mixed 957.2

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