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TISSUE PRIMARY DATA VAGINA Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Vagina
Tissue proteome
Vagina
VAGINA - Expression summary
Protein expression
Vaginai

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Squamous epithelial cells: Medium
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:91.0 nTPM
GTEx:91.0 nTPM
FANTOM5:71.9 Scaled Tags Per Million

VAGINA - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA009668Antibody HPA012736
Squamous epithelial cells Not detectedMedium




VAGINA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

91.0
GTEx sample id Sample description nTPM
Vagina
Average nTPM: 91.0
Samples: 156

Max nTPM: 224.6
Min nTPM: 45.0
Std nTPM: 25.0
Median nTPM: 87.5
GTEX-1AMFI-1526-SM-73KVY 50-59 years, female 224.6
GTEX-12WSD-2926-SM-5LZUH 60-69 years, female 156.5
GTEX-1LNCM-1026-SM-E9U5D 50-59 years, female 140.9
GTEX-1S5ZU-2626-SM-E9TII 20-29 years, female 137.4
GTEX-ZYVF-0326-SM-5GIES 50-59 years, female 137.3
GTEX-ZV6S-1326-SM-59HJA 40-49 years, female 135.1
GTEX-11GSP-2226-SM-5HL5Q 60-69 years, female 132.1
GTEX-1F48J-2526-SM-7P8TU 50-59 years, female 130.6
GTEX-12ZZX-1926-SM-5EGKC 40-49 years, female 130.5
GTEX-16NPV-2526-SM-6M483 50-59 years, female 128.8
GTEX-1JN1M-2326-SM-ARZNG 60-69 years, female 126.1
GTEX-1GN1U-2426-SM-9KNTU 50-59 years, female 126.0
GTEX-PLZ4-2726-SM-3P61A 50-59 years, female 125.8
GTEX-1HFI7-1126-SM-A96S5 50-59 years, female 124.8
GTEX-ZQG8-1126-SM-51MRL 60-69 years, female 124.2
GTEX-1HCU8-2026-SM-9YFLE 60-69 years, female 123.8
GTEX-13QIC-1826-SM-5J1MY 60-69 years, female 122.4
GTEX-145LS-2526-SM-5TDC9 60-69 years, female 122.1
GTEX-QVJO-2526-SM-CYPRA 60-69 years, female 121.9
GTEX-183WM-2126-SM-7LG4I 70-79 years, female 121.7
GTEX-113JC-1926-SM-5N9GE 50-59 years, female 121.2
GTEX-WRHU-2926-SM-4MVNQ 50-59 years, female 119.8
GTEX-1EWIQ-2326-SM-7IGNF 70-79 years, female 119.7
GTEX-15UF6-2126-SM-6M46Z 70-79 years, female 118.4
GTEX-12WSJ-1326-SM-5GCOB 40-49 years, female 117.1
GTEX-13D11-1326-SM-5IJFY 50-59 years, female 117.1
GTEX-ZAK1-2426-SM-EXOHM 50-59 years, female 116.5
GTEX-147F3-1526-SM-5SIAK 50-59 years, female 116.2
GTEX-S4UY-1326-SM-4AD4X 40-49 years, female 115.9
GTEX-ZVT3-2726-SM-5GU5X 60-69 years, female 115.7
GTEX-1I4MK-1726-SM-ARL7O 50-59 years, female 113.3
GTEX-1IE54-2626-SM-CMKFY 40-49 years, female 112.9
GTEX-1JMQL-2326-SM-CNNPV 50-59 years, female 112.6
GTEX-SN8G-2626-SM-EXUQT 50-59 years, female 112.1
GTEX-1GMR8-2526-SM-7RHI9 50-59 years, female 111.9
GTEX-ZLWG-1126-SM-4WWFQ 50-59 years, female 111.7
GTEX-NPJ7-2526-SM-EV79A 60-69 years, female 111.1
GTEX-UJHI-1326-SM-4IHJO 50-59 years, female 108.3
GTEX-S7SF-1426-SM-4AT5A 20-29 years, female 108.0
GTEX-1QPFJ-1626-SM-DTX7X 30-39 years, female 107.8
GTEX-WEY5-0826-SM-4LMIH 40-49 years, female 105.8
GTEX-ZYY3-2626-SM-5N9DH 60-69 years, female 105.1
GTEX-1PIEJ-1926-SM-EVYB7 20-29 years, female 104.6
GTEX-13OVI-0926-SM-5J1MI 60-69 years, female 102.3
GTEX-1HBPM-2726-SM-9WYUA 60-69 years, female 102.0
GTEX-1A8FM-2426-SM-7IGPE 50-59 years, female 100.3
GTEX-1QCLZ-2226-SM-DTX7R 60-69 years, female 100.2
GTEX-X8HC-2826-SM-46MWJ 50-59 years, female 98.6
GTEX-11EM3-1826-SM-5A5KO 20-29 years, female 98.5
GTEX-14A5I-2726-SM-5SIB3 50-59 years, female 97.8
GTEX-14PJ6-1626-SM-6872D 60-69 years, female 97.8
GTEX-17JCI-2526-SM-7DHLB 60-69 years, female 97.8
GTEX-W5WG-1026-SM-4LMIF 50-59 years, female 97.3
GTEX-Y114-1926-SM-4TT8J 50-59 years, female 97.3
GTEX-15DYW-2926-SM-6PANA 60-69 years, female 97.0
GTEX-OHPN-2426-SM-E9TI5 60-69 years, female 96.8
GTEX-13QBU-1726-SM-5IJFQ 40-49 years, female 96.7
GTEX-1MCC2-1126-SM-EVYD6 30-39 years, female 96.3
GTEX-ZGAY-2226-SM-4YCCX 40-49 years, female 95.9
GTEX-11DXX-1726-SM-5H11T 60-69 years, female 95.7
GTEX-11TTK-2726-SM-5GU58 60-69 years, female 94.9
GTEX-13W3W-2326-SM-5LU4Y 60-69 years, female 94.8
GTEX-RU1J-1426-SM-46MUV 20-29 years, female 94.7
GTEX-1LGRB-2126-SM-COH48 50-59 years, female 94.6
GTEX-N7MT-1926-SM-3LK5N 60-69 years, female 94.0
GTEX-YFC4-2926-SM-5IFJ8 40-49 years, female 92.8
GTEX-131YS-2426-SM-5J2OD 60-69 years, female 92.7
GTEX-17F9Y-2326-SM-7DUFP 70-79 years, female 92.2
GTEX-TMMY-1926-SM-4DXUU 40-49 years, female 92.2
GTEX-RWS6-1726-SM-47JXP 60-69 years, female 91.7
GTEX-1I1GT-1226-SM-B2LVK 60-69 years, female 91.7
GTEX-14PJM-2926-SM-69LOE 50-59 years, female 90.9
GTEX-14DAQ-2326-SM-5S2QX 60-69 years, female 89.4
GTEX-146FR-2426-SM-5NQAU 60-69 years, female 89.0
GTEX-1GN1W-1526-SM-7P8TG 50-59 years, female 88.9
GTEX-145ME-1426-SM-5RQJS 40-49 years, female 88.8
GTEX-TSE9-2526-SM-4DXUS 60-69 years, female 88.0
GTEX-1HCU6-2326-SM-ACKXP 60-69 years, female 87.5
GTEX-146FH-2626-SM-5Q5E1 50-59 years, female 87.4
GTEX-131XG-2126-SM-5DUXG 50-59 years, female 87.3
GTEX-QCQG-1226-SM-48U23 50-59 years, female 87.3
GTEX-13N11-1526-SM-5L3FL 50-59 years, female 86.9
GTEX-1LVAN-1626-SM-CNPQ7 50-59 years, female 86.9
GTEX-XUZC-1226-SM-4BRVJ 30-39 years, female 86.7
GTEX-13U4I-2026-SM-5LU3L 40-49 years, female 86.5
GTEX-P78B-2226-SM-3P5ZZ 40-49 years, female 86.3
GTEX-15ER7-2526-SM-7KUFW 20-29 years, female 85.8
GTEX-QDT8-2526-SM-48TYX 30-39 years, female 85.3
GTEX-PX3G-2526-SM-48TZV 20-29 years, female 84.7
GTEX-XV7Q-1626-SM-4BRWC 40-49 years, female 84.5
GTEX-1NUQO-1826-SM-E6CQU 20-29 years, female 82.2
GTEX-XUW1-0326-SM-4BOOR 50-59 years, female 82.0
GTEX-13PL7-2726-SM-5L3GB 60-69 years, female 80.8
GTEX-11XUK-1326-SM-5EQM4 40-49 years, female 79.2
GTEX-14H4A-2426-SM-664OQ 40-49 years, female 78.4
GTEX-T6MO-1226-SM-4DM5S 40-49 years, female 78.4
GTEX-T2IS-1926-SM-4DM74 20-29 years, female 78.3
GTEX-1IDJU-1026-SM-AHZ2U 60-69 years, female 77.9
GTEX-1J1OQ-1826-SM-CL53R 40-49 years, female 77.8
GTEX-15SHU-2926-SM-7KUKT 40-49 years, female 77.2
GTEX-1HBPH-2926-SM-9WPNX 40-49 years, female 76.6
GTEX-SE5C-1126-SM-4BRWZ 40-49 years, female 76.3
GTEX-18A7A-2826-SM-7LT8J 50-59 years, female 75.9
GTEX-S4P3-1126-SM-4AD52 50-59 years, female 75.8
GTEX-X15G-1926-SM-4PQZQ 50-59 years, female 75.6
GTEX-14BMU-1926-SM-5S2QC 20-29 years, female 75.3
GTEX-1LH75-1726-SM-DHXKZ 50-59 years, female 74.6
GTEX-ZVT2-0626-SM-5GICR 50-59 years, female 74.5
GTEX-OHPL-2526-SM-3MJGT 60-69 years, female 74.1
GTEX-ZP4G-0826-SM-4WWF3 20-29 years, female 73.8
GTEX-ZTPG-2226-SM-57WF9 20-29 years, female 73.7
GTEX-1CAMS-2326-SM-793CR 40-49 years, female 72.9
GTEX-13PVR-1426-SM-5S2PW 60-69 years, female 72.5
GTEX-P4PP-2526-SM-3P61P 30-39 years, female 71.9
GTEX-TML8-1126-SM-4DXSS 40-49 years, female 71.5
GTEX-1LGOU-1126-SM-D3LAI 20-29 years, female 70.5
GTEX-1QP28-1426-SM-EVR4E 50-59 years, female 70.2
GTEX-ZE7O-2426-SM-57WD7 50-59 years, female 69.9
GTEX-1HCUA-1026-SM-A9SMI 50-59 years, female 69.7
GTEX-11EMC-1926-SM-5A5JU 60-69 years, female 69.6
GTEX-15SDE-1726-SM-6LPJS 50-59 years, female 69.6
GTEX-Y8LW-1426-SM-5RQJJ 50-59 years, female 69.5
GTEX-1R9JW-1426-SM-DTX9K 30-39 years, female 69.4
GTEX-14PKU-1326-SM-6871B 40-49 years, female 69.0
GTEX-1399U-1526-SM-5J2N7 50-59 years, female 68.4
GTEX-OHPK-2526-SM-3MJH9 50-59 years, female 68.1
GTEX-WYVS-1426-SM-4ONCV 40-49 years, female 67.8
GTEX-1399S-2326-SM-5K7YV 30-39 years, female 67.5
GTEX-1C475-0526-SM-793AC 40-49 years, female 67.3
GTEX-PWN1-2526-SM-48TDS 40-49 years, female 67.3
GTEX-Y3IK-2226-SM-4YCD4 50-59 years, female 67.3
GTEX-1JN76-1526-SM-CNPPF 20-29 years, female 67.3
GTEX-1LVAM-1926-SM-E6CIM 50-59 years, female 67.1
GTEX-15SB6-1426-SM-7KUEM 50-59 years, female 67.0
GTEX-16NGA-1626-SM-72D6M 40-49 years, female 66.7
GTEX-YJ8O-1226-SM-5P9JE 40-49 years, female 66.6
GTEX-PWCY-1726-SM-48TD3 20-29 years, female 66.0
GTEX-Q734-1426-SM-DTXFX 40-49 years, female 65.9
GTEX-18D9A-1026-SM-7KFRU 30-39 years, female 65.1
GTEX-1ICG6-1626-SM-ARL81 70-79 years, female 65.0
GTEX-1F5PL-1826-SM-7P8PP 40-49 years, female 64.9
GTEX-1117F-2526-SM-5GZY6 60-69 years, female 64.5
GTEX-11I78-2026-SM-5987C 50-59 years, female 64.1
GTEX-S341-1226-SM-4AD5S 40-49 years, female 63.9
GTEX-U3ZN-0926-SM-4DXTU 30-39 years, female 62.7
GTEX-14PN3-1626-SM-6AJAV 60-69 years, female 62.6
GTEX-1MCYP-1326-SM-EV7AD 20-29 years, female 61.9
GTEX-ZC5H-2226-SM-4WAWS 40-49 years, female 61.3
GTEX-14AS3-1726-SM-5RQJV 40-49 years, female 60.7
GTEX-14JG6-0726-SM-69LQH 30-39 years, female 59.9
GTEX-1J8EW-2526-SM-CKZO2 60-69 years, female 58.5
GTEX-ZXES-0626-SM-5E45P 30-39 years, female 56.3
GTEX-ZZPU-2226-SM-5EGIV 50-59 years, female 50.8
GTEX-11VI4-0726-SM-5GU5B 40-49 years, female 50.3
GTEX-11P81-2126-SM-5HL6N 30-39 years, female 49.4
GTEX-1GF9U-1926-SM-7P8TZ 40-49 years, female 45.0
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VAGINA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

71.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Vagina
Scaled Tags Per Million: 71.9
FF:10204-103F6 68 years, female 71.9

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