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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:1187.7 nTPM
HPA Brain:394.2 nTPM
GTEx:1187.7 nTPM
FANTOM5:235.4 Scaled Tags Per Million
Pig:319.7 nTPM
Mouse:801.7 nTPM
Allen mouse:2.3 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

394.2
Sample id Sample description nTPM
Amygdala
nTPM: 379.8
2695 Female, age 67, right hemisphere 462.7
2514 Male, age 75, right hemisphere 406.6
2517 Female, age 94, left hemisphere 371.2
2814 Male, age 76, right hemisphere 329.6
1987 Female, age 91, left hemisphere 329.0
Basal amygdala
nTPM: 324.1
2827 Female, age 67, right hemisphere 445.8
2609 Male, age 75, right hemisphere 378.4
2110 Male, age 80, left hemisphere 314.2
2685 Female, age 94, left hemisphere 309.6
2243 Female, age 91, right hemisphere 259.9
1955 Male, age 76, both hemispheres 236.8
Central amygdala
nTPM: 371.2
2826 Female, age 94, left hemisphere 603.4
2515 Male, age 75, right hemisphere 436.1
1905 Male, age 76, both hemispheres 295.1
2239 Male, age 80, left hemisphere 285.6
2701 Female, age 91, right hemisphere 236.1
Corticomedial amygdala
nTPM: 303.0
2428 Male, age 75, right hemisphere 407.9
2535 Female, age 67, right hemisphere 328.0
2829 Male, age 80, left hemisphere 289.2
2429 Female, age 94, left hemisphere 272.7
2242 Female, age 91, right hemisphere 263.4
2240 Male, age 76, both hemispheres 256.7
Lateral amygdala
nTPM: 394.2
2830 Female, age 67, right hemisphere 567.3
2516 Male, age 75, right hemisphere 492.4
2534 Female, age 94, left hemisphere 465.5
2256 Male, age 80, left hemisphere 330.0
2255 Female, age 91, right hemisphere 259.4
1883 Male, age 76, both hemispheres 250.9

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1187.7
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 1187.7
Samples: 152

Max nTPM: 3896.7
Min nTPM: 534.9
Std nTPM: 535.1
Median nTPM: 1068.5
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 3896.7
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 3354.6
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 2867.5
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 2699.9
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 2652.1
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 2580.7
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 2511.0
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 2438.3
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 2341.2
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 2180.9
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 1978.0
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 1925.2
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 1921.6
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 1890.0
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 1867.0
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 1819.7
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 1778.8
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 1710.2
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 1700.4
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 1678.6
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 1654.9
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 1616.1
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 1612.9
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 1587.4
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 1548.6
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 1541.4
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 1515.9
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 1510.0
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 1482.4
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 1466.4
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 1435.5
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 1432.1
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 1414.8
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 1397.7
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 1342.0
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 1339.7
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 1333.1
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 1331.2
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 1304.0
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 1292.4
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 1286.9
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 1266.2
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 1255.8
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 1251.5
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 1248.3
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 1242.3
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 1231.3
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 1229.7
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 1222.7
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 1215.7
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 1197.4
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 1196.5
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 1186.1
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 1182.7
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 1180.0
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 1179.9
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 1165.6
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 1162.5
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 1160.2
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 1148.3
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 1133.1
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 1127.9
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 1126.9
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 1125.8
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 1117.2
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 1114.6
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 1113.1
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 1111.5
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 1108.3
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 1099.5
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 1097.5
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 1096.0
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 1090.7
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 1081.9
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 1070.3
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 1069.4
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 1067.6
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 1066.2
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 1064.0
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 1063.4
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 1057.9
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 1035.6
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 1033.1
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 1026.3
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 1005.9
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 989.7
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 987.7
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 982.6
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 967.9
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 964.1
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 958.4
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 957.3
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 952.4
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 947.3
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 945.2
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 944.5
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 943.1
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 933.2
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 932.0
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 927.7
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 923.2
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 915.5
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 915.2
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 908.5
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 907.1
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 892.0
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 888.3
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 886.9
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 875.9
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 874.0
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 862.9
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 860.7
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 848.8
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 846.7
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 832.9
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 830.7
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 827.1
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 815.8
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 812.0
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 808.4
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 804.7
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 803.8
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 802.1
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 796.1
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 780.4
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 761.7
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 756.2
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 754.0
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 752.8
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 743.1
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 737.3
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 732.1
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 726.1
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 722.4
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 717.6
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 717.3
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 713.3
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 704.9
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 703.9
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 690.4
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 678.1
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 676.8
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 674.8
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 658.7
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 654.5
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 650.8
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 648.7
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 648.1
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 634.7
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 620.0
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 603.0
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 534.9
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

235.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 235.4
FF:10151-102I7 76 years, female 235.4

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

319.7
Pig sample Sample description nTPM
Amygdala
nTPM: 319.7
Samples: 4

Max nTPM: 394.6
Min nTPM: 183.3
Sample A Female 394.6
Sample B Female 379.0
Sample C Male 321.7
Sample D Male 183.3

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

801.7
Mouse sample Sample description nTPM
Amygdala
nTPM: 801.7
Samples: 4

Max nTPM: 870.2
Min nTPM: 758.1
Sample A Male 758.1
Sample B Male 800.1
Sample C Female 870.2
Sample D Female 778.3

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

2.3
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 2.3
70473987 Antisense, RP_050614_04_F10, Mouse strain C57BL/6J (56 days, male) 2.3

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