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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:865.1 nTPM
HPA Brain:477.9 nTPM
GTEx:865.1 nTPM
FANTOM5:221.7 Scaled Tags Per Million
Pig:603.1 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

477.9
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 341.4
1981 Female, age 72, midline 452.1
2565 Male, age 75, midline 429.8
2048 Male, age 55, midline 289.8
2194 Female, age 79, both hemispheres 273.2
2816 Male, age 47, midline 262.1
Cervical spinal cord, dorsal horn
nTPM: 385.5
2173 Female, age 72, unknown 500.8
2069 Male, age 47, both hemispheres 486.0
1877 Male, age 55, unknown 391.9
2296 Male, age 66, both hemispheres 374.9
2297 Male, age 75, both hemispheres 294.1
2721 Male, age 90, both hemispheres 264.9
Cervical spinal cord, ventral horn
nTPM: 477.9
2480 Male, age 75, both hemispheres 678.2
2809 Male, age 90, both hemispheres 601.9
2098 Female, age 72, unknown 554.2
2295 Male, age 66, both hemispheres 431.4
2068 Male, age 55, unknown 403.8
2820 Female, age 79, both hemispheres 198.2

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

865.1
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 865.1
Samples: 159

Max nTPM: 1710.3
Min nTPM: 344.2
Std nTPM: 261.7
Median nTPM: 807.0
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 1710.3
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 1586.8
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 1516.3
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 1452.9
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 1449.7
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 1429.6
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 1394.5
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 1385.7
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 1379.7
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 1358.7
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 1325.0
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 1323.7
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 1321.2
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 1315.6
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 1313.1
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 1295.4
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 1280.4
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 1256.5
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 1222.5
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 1217.9
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 1212.6
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 1210.2
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 1183.5
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 1167.3
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 1160.3
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 1132.7
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 1121.4
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 1112.9
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 1104.6
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 1084.9
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 1056.6
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 1051.0
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 1031.9
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 1030.6
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 1028.8
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 1027.5
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 1024.7
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 1019.3
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 1019.1
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 1012.1
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 1009.1
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 1007.9
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 1003.8
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 1002.2
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 1001.5
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 1000.6
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 983.5
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 974.7
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 973.4
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 971.6
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 962.0
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 953.7
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 939.3
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 924.8
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 920.0
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 916.1
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 907.6
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 902.5
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 901.2
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 884.0
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 874.7
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 873.0
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 863.6
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 862.3
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 860.6
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 846.8
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 846.0
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 844.1
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 838.3
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 838.2
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 837.0
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 835.8
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 829.9
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 823.2
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 818.5
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 816.9
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 816.9
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 815.0
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 808.8
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 807.0
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 805.1
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 803.7
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 801.5
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 801.3
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 800.5
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 800.0
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 796.0
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 788.4
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 786.2
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 781.7
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 781.6
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 774.7
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 772.9
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 769.9
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 769.2
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 765.8
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 764.9
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 758.8
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 758.6
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 749.1
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 742.9
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 740.1
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 738.5
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 738.4
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 731.5
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 729.5
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 727.7
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 716.6
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 713.2
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 709.1
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 705.5
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 702.5
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 698.6
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 695.6
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 694.3
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 691.9
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 686.0
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 684.5
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 678.2
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 666.1
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 662.1
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 657.1
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 656.9
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 654.7
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 641.3
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 638.6
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 631.9
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 630.0
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 626.2
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 626.2
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 625.4
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 620.3
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 610.5
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 609.5
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 609.5
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 607.2
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 603.4
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 602.0
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 594.8
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 594.3
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 593.5
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 593.4
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 592.6
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 587.0
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 586.5
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 573.5
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 566.2
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 559.9
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 553.4
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 547.1
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 514.2
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 510.5
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 504.2
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 504.0
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 493.5
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 474.8
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 469.0
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 444.2
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 344.2
Show allShow less

SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

221.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 221.7
FF:10159-103A6 76 years, female 232.5
FF:10181-103D1 60 years, female 211.0

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

603.1
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 603.1
Samples: 4

Max nTPM: 883.2
Min nTPM: 446.9
Sample A Female 449.7
Sample B Female 632.4
Sample C Male 883.2
Sample D Male 446.9
Ventral spinal cord
nTPM: 590.0
Samples: 4

Max nTPM: 651.9
Min nTPM: 514.8
Sample A Female 514.8
Sample B Female 632.2
Sample C Male 651.9
Sample D Male 560.9

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