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TISSUE PRIMARY DATA AMYGDALA Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Tissue proteome
Amygdala
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:784.7 nTPM
HPA Brain:282.6 nTPM
GTEx:784.7 nTPM
FANTOM5:210.4 Scaled Tags Per Million
Pig:25.9 nTPM
Mouse:287.8 nTPM
Allen mouse:13.3 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

282.6
Sample id Sample description nTPM
Amygdala
nTPM: 282.6
2695 Female, age 67, right hemisphere 370.2
2514 Male, age 75, right hemisphere 296.7
2814 Male, age 76, right hemisphere 269.4
1987 Female, age 91, left hemisphere 262.8
2517 Female, age 94, left hemisphere 213.6
Basal amygdala
nTPM: 214.4
2827 Female, age 67, right hemisphere 281.3
2609 Male, age 75, right hemisphere 228.9
2110 Male, age 80, left hemisphere 210.4
1955 Male, age 76, both hemispheres 199.2
2685 Female, age 94, left hemisphere 193.4
2243 Female, age 91, right hemisphere 173.2
Central amygdala
nTPM: 247.5
2826 Female, age 94, left hemisphere 371.1
2515 Male, age 75, right hemisphere 249.2
1905 Male, age 76, both hemispheres 226.9
2701 Female, age 91, right hemisphere 201.0
2239 Male, age 80, left hemisphere 189.3
Corticomedial amygdala
nTPM: 215.5
2428 Male, age 75, right hemisphere 248.3
2829 Male, age 80, left hemisphere 223.2
2240 Male, age 76, both hemispheres 220.8
2242 Female, age 91, right hemisphere 213.2
2535 Female, age 67, right hemisphere 198.8
2429 Female, age 94, left hemisphere 188.5
Lateral amygdala
nTPM: 244.1
2830 Female, age 67, right hemisphere 354.2
2516 Male, age 75, right hemisphere 281.6
2534 Female, age 94, left hemisphere 245.0
1883 Male, age 76, both hemispheres 223.8
2256 Male, age 80, left hemisphere 198.1
2255 Female, age 91, right hemisphere 161.7

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

784.7
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 784.7
Samples: 152

Max nTPM: 2600.1
Min nTPM: 468.2
Std nTPM: 287.8
Median nTPM: 727.5
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 2600.1
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 1960.3
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 1943.5
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 1753.5
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 1541.2
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 1371.1
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 1366.5
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 1358.8
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 1255.4
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 1248.2
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 1244.1
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 1132.9
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 1111.1
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 1069.5
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 1036.1
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 1027.5
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 1018.9
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 1005.7
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 997.4
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 973.7
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 969.0
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 960.2
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 944.6
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 934.7
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 933.5
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 921.7
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 905.4
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 902.5
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 892.9
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 884.4
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 883.4
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 882.9
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 864.4
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 839.0
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 836.8
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 835.8
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 835.3
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 833.3
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 831.2
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 830.8
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 820.6
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 808.7
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 805.4
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 805.4
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 802.7
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 801.7
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 800.2
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 798.6
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 798.1
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 792.6
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 789.0
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 786.1
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 783.1
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 779.5
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 777.1
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 773.5
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 772.9
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 771.8
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 771.6
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 771.4
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 770.8
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 765.3
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 764.0
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 763.9
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 760.4
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 756.3
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 755.5
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 754.6
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 749.7
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 742.6
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 736.5
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 733.9
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 731.4
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 731.3
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 730.6
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 728.9
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 726.1
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 725.9
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 724.4
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 707.6
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 706.5
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 701.7
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 697.9
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 694.0
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 692.9
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 691.9
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 690.4
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 687.9
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 685.1
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 675.6
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 671.9
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 668.7
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 665.6
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 662.5
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 661.5
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 660.8
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 657.8
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 657.5
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 655.6
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 652.7
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 651.6
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 650.5
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 646.3
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 642.0
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 640.8
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 639.0
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 638.0
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 636.6
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 635.1
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 631.6
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 631.3
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 629.5
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 629.3
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 628.0
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 627.6
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 626.3
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 625.0
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 622.2
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 621.3
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 617.8
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 617.5
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 612.8
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 608.2
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 604.2
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 595.3
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 594.2
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 593.8
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 592.5
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 583.8
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 583.5
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 579.2
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 576.9
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 576.6
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 575.3
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 571.5
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 563.0
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 562.6
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 555.9
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 553.4
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 541.7
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 534.7
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 534.4
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 533.9
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 519.5
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 502.7
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 496.6
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 493.9
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 493.7
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 489.1
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 477.9
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 476.1
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 468.2
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

210.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 210.4
FF:10151-102I7 76 years, female 210.4

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

25.9
Pig sample Sample description nTPM
Amygdala
nTPM: 25.9
Samples: 4

Max nTPM: 31.0
Min nTPM: 18.5
Sample A Female 18.5
Sample B Female 30.7
Sample C Male 31.0
Sample D Male 23.3

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

287.8
Mouse sample Sample description nTPM
Amygdala
nTPM: 287.8
Samples: 4

Max nTPM: 313.1
Min nTPM: 271.0
Sample A Male 271.0
Sample B Male 277.5
Sample C Female 313.1
Sample D Female 289.5

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

13.3
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 13.3
70813131 Antisense, RP_050712_03_C03, Mouse strain C57BL/6J (56 days, male) 15.4
68441454 Antisense, RP_041214_02_D04, Mouse strain C57BL/6J (56 days, male) 15.2
74819237 Antisense, RP_060315_02_C01, Mouse strain C57BL/6J (56 days, male) 9.4

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