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SNRPD2
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  • SNRPD2
TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: High
Neuronal cells: High
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
GTEx:204.5 nTPM
FANTOM5:96.4 Scaled Tags Per Million
Pig:115.3 nTPM

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA041437
Glial cells High
Neuronal cells High


CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

204.5
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 204.5
Samples: 246

Max nTPM: 488.4
Min nTPM: 101.4
Std nTPM: 55.1
Median nTPM: 194.6
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 488.4
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 452.4
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 408.9
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 395.6
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 383.1
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 345.6
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 340.1
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 337.5
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 337.2
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 315.2
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 313.3
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 305.7
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 305.1
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 301.7
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 301.2
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 300.0
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 299.3
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 286.5
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 282.9
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 282.0
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 279.5
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 277.5
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 276.5
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 275.5
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 271.3
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 269.0
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 265.4
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 264.8
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 260.2
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 256.7
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 255.4
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 253.7
GTEX-12WSH-0011-R5b-SM-5P9F3 50-59 years, male 251.4
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 250.9
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 248.8
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 248.3
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 246.1
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 245.9
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 245.9
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 245.3
GTEX-TSE9-0011-R5A-SM-3DB7J 60-69 years, female 243.5
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 243.1
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 242.3
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 241.4
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 239.6
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 237.4
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 237.2
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 234.4
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 234.4
GTEX-OXRO-0011-R5A-SM-2I5EG 60-69 years, female 233.5
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 233.5
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 233.3
GTEX-UTHO-0011-R5A-SM-3GIJD 60-69 years, male 233.2
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 232.8
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 232.4
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 232.3
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 232.3
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 231.3
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 230.3
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 230.2
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 229.8
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 229.5
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 229.0
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 228.8
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 226.3
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 226.1
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 225.8
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 225.6
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 225.3
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 224.4
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 224.2
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 224.2
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 223.2
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 221.3
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 221.3
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 221.2
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 217.6
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 216.8
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 215.7
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 212.7
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 212.7
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 212.6
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 212.2
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 211.6
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 211.4
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 211.4
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 210.9
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 209.9
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 209.4
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 208.3
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 207.4
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 207.3
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 206.6
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 204.3
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 203.9
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 203.4
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 203.0
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 202.9
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 202.9
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 202.7
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 201.8
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 201.7
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 201.4
GTEX-P44H-0011-R5A-SM-2XCEX 40-49 years, male 201.1
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 200.9
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 200.7
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 200.3
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 200.0
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 199.5
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 198.7
GTEX-RU72-0011-R5A-SM-2TF6U 50-59 years, female 198.7
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 198.3
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 198.2
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 198.1
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 197.4
GTEX-OXRN-0011-R5A-SM-2I5EF 50-59 years, male 196.6
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 196.2
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 195.9
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 195.2
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 194.9
GTEX-N7MT-0011-R5a-SM-2I3G6 60-69 years, female 194.9
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 194.8
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 194.8
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 194.3
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 194.0
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 193.9
GTEX-P44G-0011-R5A-SM-2I3FA 30-39 years, male 193.0
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 192.9
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 192.1
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 191.9
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 191.5
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 189.9
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 189.3
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 188.9
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 188.5
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 188.0
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 187.2
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 186.1
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 185.8
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 185.1
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 184.7
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 184.4
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 184.2
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 184.2
GTEX-R55E-0011-R5A-SM-2TC5N 20-29 years, male 184.2
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 184.1
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 184.1
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 183.4
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 183.2
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 183.0
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 182.4
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 182.3
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 182.1
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 181.8
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 181.2
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 181.2
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 181.2
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 180.6
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 180.3
GTEX-S7SE-0011-R5A-SM-2XCDA 50-59 years, male 180.0
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 179.9
GTEX-18464-0011-R5b-SM-718A6 50-59 years, male 179.6
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 179.5
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 179.3
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 177.9
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 177.9
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 177.9
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 176.9
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 176.4
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 176.2
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 176.0
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 175.8
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 175.8
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 175.2
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 174.4
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 174.2
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 173.8
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 173.6
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 173.1
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 172.8
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 172.3
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 172.1
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 171.7
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 171.3
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 171.3
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 171.0
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 170.6
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 170.4
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 170.3
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 169.7
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 169.2
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 168.6
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 167.3
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 167.0
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 167.0
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 165.9
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 165.8
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 165.3
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 165.2
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 165.0
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 164.8
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 164.3
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 163.2
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 163.0
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 162.4
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 162.3
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 160.5
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 159.5
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 159.4
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 159.0
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 159.0
GTEX-RVPV-0011-R5A-SM-2TF69 60-69 years, male 156.1
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 156.0
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 155.6
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 154.6
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 153.1
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 153.0
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 152.7
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 151.4
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 150.2
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 148.6
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 148.5
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 148.5
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 148.3
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 148.0
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 145.2
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 144.8
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 144.4
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 142.3
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 139.9
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 138.9
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 138.6
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 138.5
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 138.1
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 138.0
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 137.4
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 135.3
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 134.7
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 134.3
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 129.8
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 126.4
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 117.1
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 114.0
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 109.6
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 105.3
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 101.4
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

96.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 96.4
FF:10164-103B2 76 years, female 96.4

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

115.3
Pig sample Sample description nTPM
Caudate
nTPM: 115.3
Samples: 4

Max nTPM: 132.5
Min nTPM: 92.9
Sample A Female 108.6
Sample B Female 127.3
Sample C Male 132.5
Sample D Male 92.9

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