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TISSUE PRIMARY DATA SMALL INTESTINE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Small intestine
Tissue proteome
Intestine
SMALL INTESTINE - Expression summary
Protein expression
Small intestinei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Endocrine cells: Medium
Enterocytes: Medium
Enterocytes - Microvilli: Not detected
Goblet cells: Medium
Paneth cells: Medium
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:163.4 nTPM
HPA:162.7 nTPM
GTEx:163.4 nTPM
FANTOM5:41.0 Scaled Tags Per Million

SMALL INTESTINE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA041437
Endocrine cells Medium
Enterocytes Medium
Enterocytes - Microvilli Not detected
Goblet cells Medium
Paneth cells Medium



SMALL INTESTINE - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Average nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

162.7
overview
Male, age 65
Small intestine sample 232
nTPM: 167.8
Cell types%
Glandular cells:
55

Smooth muscle cells:
5

Other cell types:
40

overview
Male, age 39
Small intestine sample 233
nTPM: 167.8
Cell types%
Glandular cells:
40

Smooth muscle cells:
5

Other cell types:
55

overview
Male, age 68
Small intestine sample 234
nTPM: 160.3
Cell types%
Glandular cells:
30

Smooth muscle cells:
15

Other cell types:
55

N/A
Male, age 85
Small intestine sample 235
nTPM: 155

SMALL INTESTINE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

163.4
GTEx sample id Sample description nTPM
Small Intestine - Terminal Ileum
Average nTPM: 163.4
Samples: 187

Max nTPM: 351.1
Min nTPM: 83.9
Std nTPM: 39.4
Median nTPM: 159.2
GTEX-1NSGN-2126-SM-DPRYN 50-59 years, male 351.1
GTEX-1EMGI-2826-SM-7IGMR 60-69 years, male 327.3
GTEX-Y5LM-1626-SM-4VDTB 40-49 years, female 299.1
GTEX-1MGNQ-2326-SM-EV7BG 40-49 years, male 265.8
GTEX-1PIEJ-1526-SM-E6CP8 20-29 years, female 250.8
GTEX-1CB4F-1826-SM-7MGXI 60-69 years, male 250.2
GTEX-16NGA-1126-SM-7KFSY 40-49 years, female 249.8
GTEX-14XAO-1926-SM-6ETZO 60-69 years, female 241.2
GTEX-1GL5R-2026-SM-7MKHP 50-59 years, male 235.8
GTEX-14PK6-1626-SM-6871I 70-79 years, female 223.6
GTEX-1KXAM-2026-SM-DHXKI 60-69 years, male 220.4
GTEX-Y5V5-1826-SM-4VDS5 60-69 years, female 219.3
GTEX-1OJC3-1626-SM-E9U65 20-29 years, male 217.0
GTEX-WRHK-1026-SM-4MVOD 20-29 years, female 213.1
GTEX-13X6H-1826-SM-7EWCZ 50-59 years, female 212.8
GTEX-1192X-2526-SM-59868 50-59 years, male 207.5
GTEX-183FY-1626-SM-793D8 20-29 years, male 206.0
GTEX-UPK5-2026-SM-4JBIM 40-49 years, male 204.0
GTEX-Y3IK-1726-SM-4YCCR 50-59 years, female 202.7
GTEX-13W3W-2026-SM-5K7UL 60-69 years, female 202.0
GTEX-1K9T9-2726-SM-D4P3E 50-59 years, female 201.2
GTEX-16A39-1426-SM-6LLI6 30-39 years, female 200.4
GTEX-13NYB-1826-SM-5J1N3 40-49 years, male 200.3
GTEX-18A66-2526-SM-7KFTZ 60-69 years, male 200.0
GTEX-1RAZQ-2226-SM-DPRZR 30-39 years, male 200.0
GTEX-1LH75-1926-SM-DIPGD 50-59 years, female 199.8
GTEX-1CAMS-2426-SM-7DHMV 40-49 years, female 199.7
GTEX-WH7G-1626-SM-4LVMY 40-49 years, male 199.7
GTEX-1JJE9-2226-SM-CXZJM 70-79 years, male 199.2
GTEX-VUSG-1726-SM-4KKZL 50-59 years, male 198.0
GTEX-1RAZA-1826-SM-DTXA2 20-29 years, male 196.9
GTEX-13RTK-0826-SM-5Q5C6 20-29 years, male 196.5
GTEX-1R9K4-2326-SM-E6CRB 60-69 years, male 195.0
GTEX-1JMQK-2426-SM-CXZJU 60-69 years, male 194.5
GTEX-XPVG-1726-SM-4B65W 50-59 years, male 194.0
GTEX-Y3I4-1326-SM-4TT8Z 50-59 years, male 192.8
GTEX-11TUW-1926-SM-5BC58 60-69 years, male 192.7
GTEX-1GMR2-1026-SM-7MKHJ 50-59 years, male 192.5
GTEX-1QW4Y-1226-SM-EWRMY 30-39 years, male 190.7
GTEX-1GMR3-2726-SM-7MKFB 40-49 years, male 190.5
GTEX-X15G-1426-SM-4PQZK 50-59 years, female 188.4
GTEX-11P82-0826-SM-5P9GU 20-29 years, male 187.7
GTEX-117YX-0326-SM-5GICL 50-59 years, male 187.6
GTEX-1S5ZA-1326-SM-EV7BB 20-29 years, male 186.4
GTEX-1PDJ9-1826-SM-E9U66 20-29 years, male 185.8
GTEX-131XE-0926-SM-5HL7J 50-59 years, male 185.7
GTEX-WFG8-1626-SM-4LVMB 20-29 years, male 184.7
GTEX-14BMU-1426-SM-5TDE5 20-29 years, female 184.4
GTEX-1S82Z-1826-SM-E9TIK 30-39 years, female 183.7
GTEX-1I1GT-1826-SM-ARZLW 60-69 years, female 183.4
GTEX-14C39-1826-SM-5ZZW4 40-49 years, male 182.6
GTEX-11VI4-1626-SM-5EQKO 40-49 years, female 181.0
GTEX-14PKV-2026-SM-6AJ9A 20-29 years, female 181.0
GTEX-15EU6-1826-SM-7PC1W 50-59 years, male 180.6
GTEX-17MFQ-1026-SM-7KFSZ 20-29 years, male 179.8
GTEX-ZA64-1226-SM-5HL7B 20-29 years, male 179.5
GTEX-11LCK-1926-SM-5A5KE 30-39 years, male 179.3
GTEX-1IKOE-1926-SM-ARU7V 30-39 years, female 178.9
GTEX-133LE-1426-SM-5IFH1 20-29 years, female 177.3
GTEX-1QPFJ-2626-SM-DPRZU 30-39 years, female 177.2
GTEX-1H11D-2526-SM-9JGGU 40-49 years, male 176.7
GTEX-1OKEX-1126-SM-DTXEB 60-69 years, male 175.7
GTEX-WEY5-1526-SM-4LMJF 40-49 years, female 174.8
GTEX-1BAJH-2526-SM-7IGOT 70-79 years, male 174.4
GTEX-ZTPG-2626-SM-57WFX 20-29 years, female 174.1
GTEX-1L5NE-1826-SM-EV79T 50-59 years, male 174.0
GTEX-XGQ4-1326-SM-4GIDU 50-59 years, male 173.5
GTEX-WFJO-0926-SM-4LVM2 30-39 years, male 173.2
GTEX-1B8KZ-1126-SM-7IGLX 50-59 years, male 172.2
GTEX-ZAB5-1526-SM-5HL9P 50-59 years, male 172.0
GTEX-1399R-2026-SM-5K7WN 30-39 years, male 171.5
GTEX-1QP28-1726-SM-E6CRK 50-59 years, female 171.3
GTEX-XMK1-1826-SM-4B66F 40-49 years, male 171.1
GTEX-13QBU-1926-SM-5IJEW 40-49 years, female 169.8
GTEX-1MUQO-2426-SM-EAZ5A 60-69 years, male 169.6
GTEX-148VJ-2226-SM-5NQ9M 70-79 years, male 168.8
GTEX-X5EB-1626-SM-4E3IV 40-49 years, male 167.9
GTEX-17KNJ-1626-SM-718AL 50-59 years, male 167.3
GTEX-11NSD-1726-SM-5N9C3 20-29 years, male 167.1
GTEX-ZVP2-1726-SM-5GU5P 50-59 years, male 166.5
GTEX-Z9EW-0926-SM-5CVMM 40-49 years, male 166.2
GTEX-ZYFG-2026-SM-5E43Y 60-69 years, female 165.2
GTEX-1R9JW-1926-SM-EVR4J 30-39 years, female 165.0
GTEX-13111-1426-SM-5DUW3 50-59 years, male 164.3
GTEX-1F75I-2526-SM-9WPOZ 40-49 years, male 163.6
GTEX-13O61-1326-SM-5KM31 60-69 years, male 163.5
GTEX-1R9PM-1626-SM-DPRY9 20-29 years, male 163.5
GTEX-1JK1U-1226-SM-CNNPN 60-69 years, male 163.1
GTEX-1399U-2126-SM-5IFEZ 50-59 years, female 162.2
GTEX-1LGOU-1426-SM-D3L8N 20-29 years, female 161.9
GTEX-111CU-1326-SM-5NQ8L 50-59 years, male 159.8
GTEX-16AAH-1426-SM-7KFTR 50-59 years, male 159.8
GTEX-1JN76-1126-SM-C1YRL 20-29 years, female 159.4
GTEX-1C475-1426-SM-793CH 40-49 years, female 159.2
GTEX-131XG-1726-SM-5LZUR 50-59 years, female 158.7
GTEX-1CAMR-0826-SM-7MKFK 20-29 years, male 158.6
GTEX-18QFQ-1626-SM-72D7H 30-39 years, male 158.5
GTEX-Y111-2226-SM-4SOJB 50-59 years, male 157.7
GTEX-13FTW-2026-SM-5IJE2 40-49 years, male 156.6
GTEX-139YR-2226-SM-5IFFW 50-59 years, male 155.8
GTEX-1H1DE-1426-SM-9JGHV 20-29 years, male 155.7
GTEX-ZPIC-2326-SM-57WDW 40-49 years, female 155.5
GTEX-XAJ8-0526-SM-47JYK 40-49 years, male 155.2
GTEX-1LBAC-1526-SM-CXZKU 20-29 years, male 155.0
GTEX-13FH7-1226-SM-5IJFK 50-59 years, female 154.7
GTEX-1HSMQ-2226-SM-C1YRD 50-59 years, male 154.4
GTEX-139T6-1026-SM-5IJGC 50-59 years, male 154.2
GTEX-1RAZR-1826-SM-E6CRE 40-49 years, male 153.8
GTEX-ZEX8-1826-SM-57WBH 50-59 years, male 153.5
GTEX-15DZA-0826-SM-6AJBF 30-39 years, female 151.7
GTEX-1J8QM-1026-SM-C1YQA 60-69 years, female 151.1
GTEX-11XUK-1426-SM-5EQMG 40-49 years, female 150.7
GTEX-ZP4G-1626-SM-57WGD 20-29 years, female 150.7
GTEX-VJYA-0926-SM-4KL1N 60-69 years, male 149.8
GTEX-ZLWG-1626-SM-DNZZ1 50-59 years, female 149.7
GTEX-1QCLZ-2126-SM-EWRNC 60-69 years, female 148.9
GTEX-WYJK-1526-SM-4ONCW 50-59 years, male 148.6
GTEX-ZC5H-2326-SM-4WAYT 40-49 years, female 148.1
GTEX-ZF29-1626-SM-4WKFJ 60-69 years, female 146.7
GTEX-14PJ3-1326-SM-664O7 50-59 years, male 146.4
GTEX-ZF2S-1726-SM-57WFT 50-59 years, female 146.3
GTEX-1R7EV-1226-SM-DTX82 40-49 years, male 146.2
GTEX-ZZ64-0526-SM-5GZXM 20-29 years, male 144.9
GTEX-13113-1226-SM-5EGHT 60-69 years, female 144.6
GTEX-13CF3-1226-SM-5LZXN 60-69 years, female 144.5
GTEX-ZG7Y-1926-SM-DNZZ5 50-59 years, male 144.5
GTEX-ZQUD-0926-SM-57WE3 30-39 years, male 144.4
GTEX-ZQG8-2526-SM-57WEQ 60-69 years, female 143.3
GTEX-12BJ1-1926-SM-5HL9Z 60-69 years, male 142.7
GTEX-1AX8Z-2526-SM-731E3 60-69 years, male 141.8
GTEX-14PKU-1626-SM-6871C 40-49 years, female 141.7
GTEX-WQUQ-2426-SM-4MVNW 60-69 years, male 140.9
GTEX-14DAR-1426-SM-5RQIR 50-59 years, male 140.5
GTEX-1QP2A-2426-SM-EXOJA 50-59 years, male 140.2
GTEX-XUZC-1426-SM-4BRV3 30-39 years, female 139.8
GTEX-WFG7-1726-SM-4LVME 20-29 years, male 139.6
GTEX-11DXX-1626-SM-5H11H 60-69 years, female 139.5
GTEX-1R9K5-2026-SM-E6CPS 50-59 years, male 139.3
GTEX-WHSB-1026-SM-4M1XN 50-59 years, male 138.6
GTEX-14E6E-1626-SM-5RQI7 30-39 years, male 138.0
GTEX-11DXZ-1326-SM-5H11X 50-59 years, male 136.8
GTEX-YFCO-1326-SM-664NV 40-49 years, male 136.6
GTEX-145LT-1026-SM-5LU9O 40-49 years, male 135.4
GTEX-ZLFU-1526-SM-4WWBT 40-49 years, male 134.8
GTEX-15G1A-1726-SM-6LPI4 30-39 years, male 134.7
GTEX-YB5E-1526-SM-5IFIE 40-49 years, male 133.8
GTEX-13OVI-1926-SM-5IJCG 60-69 years, female 133.5
GTEX-WFON-1526-SM-4LVMP 40-49 years, male 133.0
GTEX-ZDTT-1726-SM-5HL69 60-69 years, male 132.1
GTEX-ZXES-1526-SM-5NQ95 30-39 years, female 131.4
GTEX-145ME-0926-SM-5O9AR 40-49 years, female 131.3
GTEX-ZLV1-1126-SM-4WWBW 60-69 years, female 130.8
GTEX-11EQ9-1326-SM-5985X 30-39 years, male 130.1
GTEX-YEC4-1726-SM-4W21E 40-49 years, male 128.8
GTEX-12WSK-1526-SM-5CVNO 40-49 years, female 128.4
GTEX-Y114-1426-SM-4TT6W 50-59 years, female 127.9
GTEX-1C64O-2526-SM-79ONO 60-69 years, male 127.1
GTEX-14PJ6-1726-SM-6AJBN 60-69 years, female 126.5
GTEX-ZVT2-2126-SM-5NQ93 50-59 years, female 126.0
GTEX-ZTX8-0526-SM-59HLD 20-29 years, male 122.9
GTEX-11I78-1126-SM-5A5K5 50-59 years, female 122.1
GTEX-XBED-1426-SM-4AT4G 60-69 years, male 121.5
GTEX-131XF-1326-SM-5GCMQ 60-69 years, male 121.0
GTEX-11P7K-1626-SM-5GU63 30-39 years, male 120.5
GTEX-1497J-1926-SM-5TDCC 60-69 years, male 119.9
GTEX-XXEK-1026-SM-4BRUW 50-59 years, male 119.8
GTEX-144GM-1026-SM-79OKU 20-29 years, male 119.7
GTEX-WY7C-1826-SM-4ONCE 50-59 years, male 118.8
GTEX-Y9LG-1626-SM-5IFHM 30-39 years, male 118.3
GTEX-14PJN-0826-SM-686ZL 30-39 years, male 117.3
GTEX-1399S-2026-SM-5KM4B 30-39 years, female 115.8
GTEX-17HHE-1726-SM-79OKT 50-59 years, male 114.6
GTEX-13PL7-2626-SM-5IFH4 60-69 years, female 113.9
GTEX-YF7O-1826-SM-5IFIU 50-59 years, male 113.0
GTEX-111YS-1426-SM-5GID8 60-69 years, male 112.4
GTEX-1R7EU-1326-SM-E6CQ6 60-69 years, male 112.4
GTEX-13O21-1026-SM-5IJDU 50-59 years, male 111.1
GTEX-16MTA-1526-SM-6LPJB 50-59 years, male 110.7
GTEX-13D11-0726-SM-5LZZB 50-59 years, female 109.5
GTEX-1B8KE-1726-SM-7IGMN 50-59 years, male 109.0
GTEX-ZTSS-0926-SM-59865 40-49 years, male 107.0
GTEX-ZVZP-1826-SM-5GZXB 50-59 years, male 105.3
GTEX-1122O-1326-SM-5H11F 60-69 years, female 103.9
GTEX-ZPCL-1726-SM-57WEO 60-69 years, female 100.1
GTEX-1AMFI-1926-SM-731F2 50-59 years, female 99.6
GTEX-14PN3-2026-SM-68729 60-69 years, female 92.8
GTEX-1J8Q3-2526-SM-CNNQ4 60-69 years, male 83.9
Show allShow less

SMALL INTESTINE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

41.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Small intestine
Scaled Tags Per Million: 41.0
FF:10024-101D6 15,40,85 years, mixed 41.0

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