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TISSUE PRIMARY DATA HIPPOCAMPUS Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Hippocampus
Tissue proteome
HIPPOCAMPUS - Expression summary
Protein expression
Hippocampusi

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: High
Neuronal cells: High
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
HPA Brain:109.5 nTPM
GTEx:196.0 nTPM
FANTOM5:99.2 Scaled Tags Per Million

HIPPOCAMPUS - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA041437
Glial cells High
Neuronal cells High



HIPPOCAMPUS - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

109.5
Sample id Sample description nTPM
Hippocampus
nTPM: 109.5
1898 Male, age 80, left hemisphere 133.5
2621 Female, age 67, right hemisphere 113.8
1855 Male, age 76, left hemisphere 110.5
2529 Female, age 94, left hemisphere 108.5
1911 Female, age 85, right hemisphere 99.8
2148 Female, age 91, left hemisphere 91.0

HIPPOCAMPUS - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

196.0
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 196.0
Samples: 197

Max nTPM: 528.4
Min nTPM: 96.7
Std nTPM: 58.6
Median nTPM: 186.5
GTEX-14LLW-0011-R1a-SM-5ZZVD 70-79 years, female 528.4
GTEX-144GL-0011-R1a-SM-5PNZ5 50-59 years, male 420.4
GTEX-NL3H-0011-R1a-SM-48TDJ 60-69 years, male 392.5
GTEX-13NYB-0011-R1b-SM-5KM4F 40-49 years, male 345.1
GTEX-145LU-0011-R1a-SM-5Q5CE 50-59 years, male 341.8
GTEX-13O3Q-0011-R1b-SM-5KM3L 50-59 years, male 338.2
GTEX-1IOXB-0011-R1a-SM-D4P27 50-59 years, male 321.7
GTEX-13FXS-0011-R1a-SM-5K7U6 50-59 years, male 318.7
GTEX-12WSH-0011-R1a-SM-5GU5V 50-59 years, male 315.5
GTEX-1399T-0011-R1b-SM-5DUWN 60-69 years, male 307.3
GTEX-1GMR8-0011-R1b-SM-CJI2O 50-59 years, female 295.7
GTEX-1HR98-0011-R1a-SM-ARZLQ 60-69 years, male 293.8
GTEX-14PN4-0011-R1b-SM-69LP8 50-59 years, male 290.6
GTEX-1F75A-0011-R1b-SM-CE6RA 50-59 years, male 288.9
GTEX-1HT8W-0011-R1b-SM-CJI3V 30-39 years, male 286.4
GTEX-13PDP-0011-R1a-SM-5PNX5 60-69 years, male 279.3
GTEX-ZF28-0011-R1a-SM-4WWD1 60-69 years, male 278.4
GTEX-1E1VI-0011-R1a-SM-ARZMM 50-59 years, male 277.2
GTEX-OHPN-0011-R1A-SM-2I5GB 60-69 years, female 275.7
GTEX-17HII-0011-R1b-SM-7MGVW 50-59 years, male 274.7
GTEX-17HG3-0011-R1a-SM-7LG6H 30-39 years, female 273.8
GTEX-1CB4G-0011-R1b-SM-9QEHT 60-69 years, male 266.8
GTEX-1HSMO-0011-R1a-SM-CM2SV 60-69 years, male 264.0
GTEX-11EI6-0011-R1a-SM-DO93L 60-69 years, male 259.6
GTEX-1LG7Y-0011-R1a-SM-EYYWV 50-59 years, male 257.9
GTEX-1H4P4-0011-R1b-SM-CL54V 50-59 years, male 256.6
GTEX-139T8-0011-R1a-SM-5HL75 60-69 years, male 256.1
GTEX-11DXW-0011-R1a-SM-DNZZD 40-49 years, male 248.5
GTEX-13RTL-0011-R1a-SM-5PNZ8 40-49 years, male 244.6
GTEX-TSE9-0011-R1A-SM-3DB7E 60-69 years, female 242.8
GTEX-T5JC-0011-R1A-SM-32PM6 20-29 years, male 242.1
GTEX-1H3VE-0011-R1a-SM-A9G1K 40-49 years, male 237.9
GTEX-N7MS-0011-R1a-SM-2HMJG 60-69 years, male 237.7
GTEX-1B8SF-0011-R1b-SM-7P8Q8 60-69 years, male 236.0
GTEX-12WSF-0011-R1a-SM-5DUVI 70-79 years, male 233.6
GTEX-1EX96-0011-R1a-SM-CE6R5 50-59 years, male 233.0
GTEX-1313W-0011-R1b-SM-5EQ4A 50-59 years, female 232.6
GTEX-13FTY-0011-R1a-SM-5LZXE 40-49 years, female 230.7
GTEX-131YS-0011-R1a-SM-5DUXC 60-69 years, female 227.0
GTEX-Y8DK-0011-R1A-SM-4RGLO 60-69 years, male 225.9
GTEX-1B933-0011-R1b-SM-9QEGW 50-59 years, female 225.8
GTEX-ZE7O-0011-R1a-SM-57WDM 50-59 years, female 224.9
GTEX-WHSE-0011-R1A-SM-3P5ZK 20-29 years, male 224.4
GTEX-1I1GS-0011-R1a-SM-CJI43 60-69 years, male 223.6
GTEX-1CAV2-0011-R1a-SM-ARZML 40-49 years, female 221.5
GTEX-16Z82-0011-R1b-SM-7EPHZ 60-69 years, male 220.5
GTEX-1GN73-0011-R1a-SM-CKZNT 60-69 years, male 219.2
GTEX-12WSE-0011-R1b-SM-5GU4V 20-29 years, male 218.6
GTEX-14ABY-0011-R1a-SM-6EU2W 50-59 years, male 218.1
GTEX-1F48J-0011-R1a-SM-9QEIC 50-59 years, female 217.7
GTEX-17F97-0011-R1b-SM-7IGM9 50-59 years, male 217.2
GTEX-1EH9U-0011-R1b-SM-CJI2B 60-69 years, male 217.2
GTEX-1GF9W-0011-R1a-SM-9QEIQ 60-69 years, male 215.8
GTEX-16NPV-0011-R1b-SM-7MGVZ 50-59 years, female 214.7
GTEX-13FLW-0011-R1b-SM-5LZX2 50-59 years, male 214.0
GTEX-13FHP-0011-R1b-SM-5K7XL 50-59 years, male 213.7
GTEX-13O3O-0011-R1b-SM-5KM2K 60-69 years, female 210.7
GTEX-P44G-0011-R1A-SM-2I3FE 30-39 years, male 210.4
GTEX-13NYS-0011-R1b-SM-5MR55 60-69 years, male 210.3
GTEX-16YQH-0011-R1a-SM-7LT8R 30-39 years, male 210.2
GTEX-1H1ZS-0011-R1b-SM-A9G1E 70-79 years, male 209.7
GTEX-1ICLZ-0011-R1b-SM-A9SM3 60-69 years, male 209.4
GTEX-1C6VR-0011-R1a-SM-7MXUE 60-69 years, male 209.2
GTEX-13112-0011-R1b-SM-5HL7K 50-59 years, male 207.9
GTEX-11GS4-0011-R1a-SM-DO129 60-69 years, male 206.8
GTEX-1A3MX-0011-R1b-SM-7P8PH 60-69 years, male 205.7
GTEX-139TT-0011-R1a-SM-5LZVD 60-69 years, male 204.9
GTEX-11ZTS-0011-R1a-SM-5BC71 60-69 years, female 203.4
GTEX-1GTWX-0011-R1a-SM-CE6RL 60-69 years, male 203.4
GTEX-17HHY-0011-R1a-SM-7189V 50-59 years, male 203.3
GTEX-12WSM-0011-R1a-SM-5LZW6 60-69 years, male 202.8
GTEX-1J1OQ-0011-R1a-SM-A9G1Z 40-49 years, female 202.6
GTEX-RNOR-0011-R1A-SM-CNNP5 50-59 years, female 201.4
GTEX-1GZ2Q-0011-R1a-SM-CJI2Y 40-49 years, male 200.7
GTEX-12ZZX-0011-R1a-SM-5EQ6B 40-49 years, female 200.3
GTEX-15ER7-0011-R1b-SM-7KUE1 20-29 years, female 200.2
GTEX-15DCD-0011-R1b-SM-6LPIJ 70-79 years, female 199.8
GTEX-X585-0011-R1B-SM-46MVE 50-59 years, male 198.7
GTEX-WVLH-0011-R1A-SM-4MVOK 50-59 years, male 198.2
GTEX-14BIM-0011-R1a-SM-69LQI 60-69 years, female 197.6
GTEX-1GN1U-0011-R1a-SM-CJI25 50-59 years, female 197.4
GTEX-14JIY-0011-R1a-SM-68713 60-69 years, male 196.6
GTEX-1A8G6-0011-R1a-SM-7P8PC 60-69 years, male 196.2
GTEX-T6MN-0011-R1A-SM-32QOY 50-59 years, male 194.5
GTEX-ZUA1-0011-R1a-SM-4YCE2 40-49 years, male 193.1
GTEX-1J8Q2-0011-R1a-SM-D4P2D 60-69 years, male 192.8
GTEX-1HGF4-0011-R1a-SM-CJI3S 60-69 years, male 192.3
GTEX-13FHO-0011-R1b-SM-5KLZG 60-69 years, male 192.1
GTEX-YFC4-0011-R1a-SM-4V6EH 40-49 years, female 192.0
GTEX-1F6I4-0011-R1a-SM-9OSWU 60-69 years, male 191.9
GTEX-QMR6-0011-R1A-SM-32PKW 50-59 years, male 190.5
GTEX-S7SE-0011-R1A-SM-2XCDE 50-59 years, male 190.2
GTEX-1B8L1-0011-R1a-SM-7P8SS 60-69 years, male 190.2
GTEX-YJ89-0011-R1a-SM-4RGLS 60-69 years, male 190.0
GTEX-15CHQ-0011-R1a-SM-COH27 60-69 years, male 189.9
GTEX-1AX9I-0011-R1b-SM-7RHG2 60-69 years, male 188.7
GTEX-145MH-0011-R1b-SM-5PNWY 50-59 years, male 188.4
GTEX-WL46-0011-R1A-SM-3LK6M 50-59 years, male 187.4
GTEX-1A32A-0011-R1a-SM-7P8SQ 50-59 years, female 186.5
GTEX-12WSD-0011-R1b-SM-5LZVY 60-69 years, female 185.5
GTEX-PWO3-0011-R1A-SM-2I5EW 60-69 years, female 185.3
GTEX-1B996-0011-R1b-SM-7P8PO 60-69 years, male 185.2
GTEX-P44H-0011-R1A-SM-3NM8J 40-49 years, male 184.0
GTEX-ZDXO-0011-R1a-SM-4WKF4 60-69 years, male 183.9
GTEX-13NZ8-0011-R1b-SM-5KM3V 60-69 years, female 183.6
GTEX-ZVZQ-0011-R1a-SM-57WBU 60-69 years, female 183.5
GTEX-1GN2E-0011-R1b-SM-CE6RJ 60-69 years, male 183.0
GTEX-1GF9V-0011-R1a-SM-CKZNQ 60-69 years, male 182.9
GTEX-1GZHY-0011-R1a-SM-CE6RR 50-59 years, female 181.4
GTEX-1EKGG-0011-R1b-SM-9QEI1 60-69 years, male 180.6
GTEX-WZTO-0011-R1B-SM-3NMAR 40-49 years, male 179.7
GTEX-N7MT-0011-R1a-SM-CNPO1 60-69 years, female 179.6
GTEX-13OW7-0011-R1b-SM-5L3HF 50-59 years, male 179.4
GTEX-14E6D-0011-R1b-SM-5YYAW 50-59 years, male 178.9
GTEX-1EWIQ-0011-R1a-SM-9OSX7 70-79 years, female 178.8
GTEX-NPJ7-0011-R1a-SM-3GACT 60-69 years, female 176.8
GTEX-14C5O-0011-R1b-SM-6AJBW 60-69 years, male 176.6
GTEX-13N2G-0011-R1b-SM-5MR3G 60-69 years, male 176.2
GTEX-13SLW-0011-R1a-SM-5S2W7 70-79 years, male 176.1
GTEX-16XZZ-0011-R1a-SM-7LTAH 60-69 years, male 176.1
GTEX-WWYW-0011-R1A-SM-3TW8G 50-59 years, female 176.1
GTEX-17JCI-0011-R1b-SM-718A3 60-69 years, female 175.1
GTEX-1I1HK-0011-R1b-SM-CM2T7 60-69 years, male 174.9
GTEX-QVJO-0011-R1A-SM-2S1QI 60-69 years, female 174.6
GTEX-1LB8K-0011-R1b-SM-EZ6MV 50-59 years, male 174.4
GTEX-1IKK5-0011-R1b-SM-CE6SQ 60-69 years, male 174.3
GTEX-14PJM-0011-R1a-SM-CNPO3 50-59 years, female 173.5
GTEX-X4EP-0011-R1A-SM-3P624 60-69 years, female 171.6
GTEX-XMD1-0011-R1A-SM-4AT4C 60-69 years, male 171.4
GTEX-1EMGI-0011-R1b-SM-9OSWZ 60-69 years, male 170.8
GTEX-PVOW-0011-R1A-SM-32PL6 40-49 years, male 170.0
GTEX-1C6VQ-0011-R1a-SM-7P8Q2 50-59 years, male 169.5
GTEX-144GO-0011-R1a-SM-5PNWO 60-69 years, male 169.0
GTEX-132Q8-0011-R1a-SM-5EGLK 60-69 years, male 168.8
GTEX-1C64N-0011-R1b-SM-7P8Q7 50-59 years, male 167.6
GTEX-1H1CY-0011-R1a-SM-CKZOZ 60-69 years, female 166.7
GTEX-Q2AG-0011-R1A-SM-2HMJI 40-49 years, female 166.3
GTEX-1H3NZ-0011-R1a-SM-CKZP5 60-69 years, male 166.1
GTEX-11GSP-0011-R1a-SM-9QEJ3 60-69 years, female 164.8
GTEX-1IDJH-0011-R1b-SM-ARU6U 70-79 years, male 164.8
GTEX-17MF6-0011-R1a-SM-72D6O 40-49 years, male 164.0
GTEX-1HSKV-0011-R1b-SM-CMKH7 60-69 years, male 163.9
GTEX-14PQA-0011-R1b-SM-6EU1G 50-59 years, female 163.5
GTEX-13X6I-0011-R1b-SM-5PNZC 60-69 years, male 162.1
GTEX-11ONC-0011-R1a-SM-57WD4 60-69 years, male 161.7
GTEX-183WM-0011-R1a-SM-718A8 70-79 years, female 160.9
GTEX-13OW6-0011-R1a-SM-5L3HQ 50-59 years, male 159.7
GTEX-1H3O1-0011-R1b-SM-CL554 60-69 years, male 159.4
GTEX-18A6Q-0011-R1b-SM-731DI 60-69 years, male 159.2
GTEX-X4XX-0011-R1B-SM-3P622 60-69 years, male 159.1
GTEX-131XH-0011-R1a-SM-5DUWA 50-59 years, male 158.0
GTEX-1IY9M-0011-R1a-SM-EXURZ 60-69 years, male 157.8
GTEX-11UD1-0011-R1b-SM-5BC7D 40-49 years, female 156.2
GTEX-1H1DG-0011-R1b-SM-CKZP1 70-79 years, male 156.2
GTEX-1HBPI-0011-R1b-SM-A9SKF 50-59 years, male 155.0
GTEX-11TUW-0011-R1a-SM-DO92S 60-69 years, male 151.9
GTEX-QDT8-0011-R1A-SM-32PKS 30-39 years, female 151.5
GTEX-1E2YA-0011-R1b-SM-CJI29 50-59 years, male 151.1
GTEX-15UF6-0011-R1a-SM-9QEGH 70-79 years, female 150.7
GTEX-14ASI-0011-R1b-SM-5S2TY 60-69 years, male 150.4
GTEX-ZAB4-0011-R1a-SM-4RGNO 40-49 years, male 150.1
GTEX-13JVG-0011-R1a-SM-5KM32 60-69 years, male 149.2
GTEX-13JUV-0011-R1a-SM-5LZY4 40-49 years, female 148.5
GTEX-145LS-0011-R1b-SM-5PNUP 60-69 years, female 148.4
GTEX-R55E-0011-R1A-SM-2TC6N 20-29 years, male 146.9
GTEX-13OW5-0011-R1b-SM-5L3GE 60-69 years, male 146.4
GTEX-1CB4J-0011-R1a-SM-9WG64 60-69 years, male 146.1
GTEX-1F75W-0011-R1a-SM-ARU81 60-69 years, male 146.0
GTEX-1I1GQ-0011-R1a-SM-CY8GG 50-59 years, male 145.9
GTEX-11ZVC-0011-R1b-SM-5BC6M 50-59 years, female 143.5
GTEX-13S7M-0011-R1b-SM-5PNZE 60-69 years, female 143.2
GTEX-13OW8-0011-R1a-SM-5L3HI 60-69 years, male 143.0
GTEX-13CF2-0011-R1a-SM-5LZY1 60-69 years, male 142.1
GTEX-13N1W-0011-R1b-SM-5MR4T 70-79 years, male 140.2
GTEX-17EVQ-0011-R1a-SM-7189S 70-79 years, male 138.5
GTEX-13OVJ-0011-R1b-SM-5L3I6 50-59 years, female 134.8
GTEX-1BAJH-0011-R1a-SM-7P8SV 70-79 years, male 134.8
GTEX-11WQC-0011-R1b-SM-DO932 60-69 years, male 133.6
GTEX-16GPK-0011-R1b-SM-7EWDH 60-69 years, male 132.1
GTEX-14E7W-0011-R1b-SM-5YYAT 70-79 years, male 131.6
GTEX-13G51-0011-R1a-SM-5LZYR 60-69 years, male 131.3
GTEX-13OVL-0011-R1a-SM-5L3H5 50-59 years, male 127.4
GTEX-17EVP-0011-R1a-SM-7DHLA 40-49 years, male 126.6
GTEX-11GSO-0011-R1b-SM-57WD3 60-69 years, male 126.3
GTEX-14PJO-0011-R1b-SM-6AJAK 60-69 years, male 122.4
GTEX-1F6IF-0011-R1b-SM-9WG78 60-69 years, male 122.4
GTEX-1212Z-0011-R1b-SM-5BC72 60-69 years, male 121.4
GTEX-13QIC-0011-R1a-SM-5O9CJ 60-69 years, female 121.0
GTEX-13QJC-0011-R1b-SM-5S2UU 60-69 years, female 118.3
GTEX-1I1GV-0011-R1a-SM-CL559 60-69 years, male 115.5
GTEX-14LZ3-0011-R1a-SM-69LP5 60-69 years, female 115.4
GTEX-1H23P-0011-R1a-SM-ACKVC 60-69 years, male 114.2
GTEX-NPJ8-0011-R1a-SM-33HCB 40-49 years, male 107.8
GTEX-13NZA-0011-R1b-SM-5LUAF 60-69 years, male 107.7
GTEX-UTHO-0011-R1A-SM-3GIJO 60-69 years, male 107.2
GTEX-QVUS-0011-R1A-SM-3GAD2 60-69 years, female 98.4
GTEX-13RTJ-0011-R1a-SM-5O9D9 60-69 years, male 96.7
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HIPPOCAMPUS - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

99.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 99.2
FF:10169-103B7 60 years, female 112.1
FF:10153-102I9 76 years, female 86.4

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