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TISSUE PRIMARY DATA SMALL INTESTINE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Small intestine
Tissue proteome
Intestine
SMALL INTESTINE - Expression summary
Protein expression
Small intestinei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glandular cells: Medium
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:149.9 nTPM
HPA:85.7 nTPM
GTEx:149.9 nTPM
FANTOM5:279.9 Scaled Tags Per Million

SMALL INTESTINE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody CAB025915
Glandular cells Medium


SMALL INTESTINE - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Average nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

85.7
overview
Male, age 65
Small intestine sample 232
nTPM: 65.8
Cell types%
Glandular cells:
55

Smooth muscle cells:
5

Other cell types:
40

overview
Male, age 39
Small intestine sample 233
nTPM: 126.1
Cell types%
Glandular cells:
40

Smooth muscle cells:
5

Other cell types:
55

overview
Male, age 68
Small intestine sample 234
nTPM: 38.6
Cell types%
Glandular cells:
30

Smooth muscle cells:
15

Other cell types:
55

N/A
Male, age 85
Small intestine sample 235
nTPM: 112.1

SMALL INTESTINE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

149.9
GTEx sample id Sample description nTPM
Small Intestine - Terminal Ileum
Average nTPM: 149.9
Samples: 187

Max nTPM: 413.4
Min nTPM: 14.7
Std nTPM: 89.1
Median nTPM: 129.2
GTEX-ZTSS-0926-SM-59865 40-49 years, male 413.4
GTEX-13D11-0726-SM-5LZZB 50-59 years, female 411.7
GTEX-111YS-1426-SM-5GID8 60-69 years, male 387.7
GTEX-1B8KE-1726-SM-7IGMN 50-59 years, male 377.4
GTEX-XBED-1426-SM-4AT4G 60-69 years, male 371.5
GTEX-ZTX8-0526-SM-59HLD 20-29 years, male 359.5
GTEX-ZDTT-1726-SM-5HL69 60-69 years, male 343.6
GTEX-YB5E-1526-SM-5IFIE 40-49 years, male 337.3
GTEX-ZVZP-1826-SM-5GZXB 50-59 years, male 335.7
GTEX-1AMFI-1926-SM-731F2 50-59 years, female 334.6
GTEX-13W3W-2026-SM-5K7UL 60-69 years, female 330.1
GTEX-13FTW-2026-SM-5IJE2 40-49 years, male 322.6
GTEX-14DAR-1426-SM-5RQIR 50-59 years, male 302.7
GTEX-1GMR2-1026-SM-7MKHJ 50-59 years, male 302.3
GTEX-ZYFG-2026-SM-5E43Y 60-69 years, female 293.7
GTEX-YEC4-1726-SM-4W21E 40-49 years, male 292.0
GTEX-15EU6-1826-SM-7PC1W 50-59 years, male 289.2
GTEX-WQUQ-2426-SM-4MVNW 60-69 years, male 281.8
GTEX-13OVI-1926-SM-5IJCG 60-69 years, female 280.1
GTEX-ZLV1-1126-SM-4WWBW 60-69 years, female 279.8
GTEX-XUZC-1426-SM-4BRV3 30-39 years, female 277.0
GTEX-Y3I4-1326-SM-4TT8Z 50-59 years, male 276.4
GTEX-YF7O-1826-SM-5IFIU 50-59 years, male 272.4
GTEX-11DXX-1626-SM-5H11H 60-69 years, female 265.7
GTEX-145LT-1026-SM-5LU9O 40-49 years, male 259.6
GTEX-1122O-1326-SM-5H11F 60-69 years, female 257.5
GTEX-XXEK-1026-SM-4BRUW 50-59 years, male 254.8
GTEX-1JK1U-1226-SM-CNNPN 60-69 years, male 253.1
GTEX-13QBU-1926-SM-5IJEW 40-49 years, female 243.5
GTEX-12WSK-1526-SM-5CVNO 40-49 years, female 241.4
GTEX-XGQ4-1326-SM-4GIDU 50-59 years, male 239.6
GTEX-14E6E-1626-SM-5RQI7 30-39 years, male 238.7
GTEX-WFG8-1626-SM-4LVMB 20-29 years, male 237.7
GTEX-117YX-0326-SM-5GICL 50-59 years, male 230.4
GTEX-1J8Q3-2526-SM-CNNQ4 60-69 years, male 227.9
GTEX-1QP2A-2426-SM-EXOJA 50-59 years, male 223.1
GTEX-YFCO-1326-SM-664NV 40-49 years, male 222.2
GTEX-ZLWG-1626-SM-DNZZ1 50-59 years, female 220.6
GTEX-14PN3-2026-SM-68729 60-69 years, female 216.1
GTEX-1R7EV-1226-SM-DTX82 40-49 years, male 211.9
GTEX-139T6-1026-SM-5IJGC 50-59 years, male 205.3
GTEX-XMK1-1826-SM-4B66F 40-49 years, male 204.4
GTEX-WFG7-1726-SM-4LVME 20-29 years, male 204.3
GTEX-144GM-1026-SM-79OKU 20-29 years, male 204.1
GTEX-14PKV-2026-SM-6AJ9A 20-29 years, female 203.8
GTEX-1399U-2126-SM-5IFEZ 50-59 years, female 202.2
GTEX-ZPIC-2326-SM-57WDW 40-49 years, female 200.7
GTEX-X5EB-1626-SM-4E3IV 40-49 years, male 198.2
GTEX-ZA64-1226-SM-5HL7B 20-29 years, male 196.9
GTEX-WY7C-1826-SM-4ONCE 50-59 years, male 196.7
GTEX-133LE-1426-SM-5IFH1 20-29 years, female 192.5
GTEX-ZPCL-1726-SM-57WEO 60-69 years, female 191.9
GTEX-1OKEX-1126-SM-DTXEB 60-69 years, male 189.8
GTEX-15G1A-1726-SM-6LPI4 30-39 years, male 187.2
GTEX-1QCLZ-2126-SM-EWRNC 60-69 years, female 187.0
GTEX-XAJ8-0526-SM-47JYK 40-49 years, male 186.0
GTEX-14PKU-1626-SM-6871C 40-49 years, female 185.3
GTEX-ZVP2-1726-SM-5GU5P 50-59 years, male 182.8
GTEX-WYJK-1526-SM-4ONCW 50-59 years, male 179.4
GTEX-14XAO-1926-SM-6ETZO 60-69 years, female 173.7
GTEX-Y9LG-1626-SM-5IFHM 30-39 years, male 173.5
GTEX-14PK6-1626-SM-6871I 70-79 years, female 172.2
GTEX-1S82Z-1826-SM-E9TIK 30-39 years, female 171.6
GTEX-17KNJ-1626-SM-718AL 50-59 years, male 170.9
GTEX-1R7EU-1326-SM-E6CQ6 60-69 years, male 170.9
GTEX-1CAMR-0826-SM-7MKFK 20-29 years, male 170.4
GTEX-14PJ3-1326-SM-664O7 50-59 years, male 169.8
GTEX-131XF-1326-SM-5GCMQ 60-69 years, male 169.7
GTEX-13RTK-0826-SM-5Q5C6 20-29 years, male 167.1
GTEX-14PJ6-1726-SM-6AJBN 60-69 years, female 165.7
GTEX-1MGNQ-2326-SM-EV7BG 40-49 years, male 163.7
GTEX-145ME-0926-SM-5O9AR 40-49 years, female 161.2
GTEX-WH7G-1626-SM-4LVMY 40-49 years, male 160.2
GTEX-13113-1226-SM-5EGHT 60-69 years, female 159.7
GTEX-18A66-2526-SM-7KFTZ 60-69 years, male 157.0
GTEX-ZVT2-2126-SM-5NQ93 50-59 years, female 156.4
GTEX-1C64O-2526-SM-79ONO 60-69 years, male 156.3
GTEX-14PJN-0826-SM-686ZL 30-39 years, male 156.2
GTEX-13PL7-2626-SM-5IFH4 60-69 years, female 150.9
GTEX-11EQ9-1326-SM-5985X 30-39 years, male 150.2
GTEX-111CU-1326-SM-5NQ8L 50-59 years, male 148.5
GTEX-ZF29-1626-SM-4WKFJ 60-69 years, female 147.2
GTEX-1B8KZ-1126-SM-7IGLX 50-59 years, male 144.9
GTEX-1399S-2026-SM-5KM4B 30-39 years, female 144.0
GTEX-1MUQO-2426-SM-EAZ5A 60-69 years, male 141.9
GTEX-1I1GT-1826-SM-ARZLW 60-69 years, female 136.3
GTEX-16MTA-1526-SM-6LPJB 50-59 years, male 133.9
GTEX-1J8QM-1026-SM-C1YQA 60-69 years, female 132.5
GTEX-13111-1426-SM-5DUW3 50-59 years, male 132.0
GTEX-Y5LM-1626-SM-4VDTB 40-49 years, female 130.8
GTEX-WFON-1526-SM-4LVMP 40-49 years, male 130.5
GTEX-ZG7Y-1926-SM-DNZZ5 50-59 years, male 130.2
GTEX-WHSB-1026-SM-4M1XN 50-59 years, male 129.4
GTEX-13FH7-1226-SM-5IJFK 50-59 years, female 129.2
GTEX-11I78-1126-SM-5A5K5 50-59 years, female 128.6
GTEX-1R9K5-2026-SM-E6CPS 50-59 years, male 128.6
GTEX-12BJ1-1926-SM-5HL9Z 60-69 years, male 128.3
GTEX-WRHK-1026-SM-4MVOD 20-29 years, female 127.7
GTEX-16AAH-1426-SM-7KFTR 50-59 years, male 126.3
GTEX-1HSMQ-2226-SM-C1YRD 50-59 years, male 126.2
GTEX-1L5NE-1826-SM-EV79T 50-59 years, male 126.1
GTEX-11P82-0826-SM-5P9GU 20-29 years, male 125.6
GTEX-13O21-1026-SM-5IJDU 50-59 years, male 123.4
GTEX-ZZ64-0526-SM-5GZXM 20-29 years, male 122.6
GTEX-Y3IK-1726-SM-4YCCR 50-59 years, female 121.2
GTEX-14BMU-1426-SM-5TDE5 20-29 years, female 119.2
GTEX-ZQUD-0926-SM-57WE3 30-39 years, male 118.9
GTEX-1JN76-1126-SM-C1YRL 20-29 years, female 118.8
GTEX-1NSGN-2126-SM-DPRYN 50-59 years, male 118.1
GTEX-16NGA-1126-SM-7KFSY 40-49 years, female 117.5
GTEX-11DXZ-1326-SM-5H11X 50-59 years, male 116.9
GTEX-ZXES-1526-SM-5NQ95 30-39 years, female 116.7
GTEX-1399R-2026-SM-5K7WN 30-39 years, male 116.6
GTEX-13CF3-1226-SM-5LZXN 60-69 years, female 116.2
GTEX-13O61-1326-SM-5KM31 60-69 years, male 115.9
GTEX-1LGOU-1426-SM-D3L8N 20-29 years, female 113.4
GTEX-1CAMS-2426-SM-7DHMV 40-49 years, female 111.0
GTEX-139YR-2226-SM-5IFFW 50-59 years, male 109.3
GTEX-11P7K-1626-SM-5GU63 30-39 years, male 107.7
GTEX-16A39-1426-SM-6LLI6 30-39 years, female 105.1
GTEX-ZP4G-1626-SM-57WGD 20-29 years, female 104.1
GTEX-ZQG8-2526-SM-57WEQ 60-69 years, female 103.3
GTEX-15DZA-0826-SM-6AJBF 30-39 years, female 101.9
GTEX-WEY5-1526-SM-4LMJF 40-49 years, female 101.9
GTEX-13X6H-1826-SM-7EWCZ 50-59 years, female 101.8
GTEX-1KXAM-2026-SM-DHXKI 60-69 years, male 100.8
GTEX-WFJO-0926-SM-4LVM2 30-39 years, male 100.1
GTEX-XPVG-1726-SM-4B65W 50-59 years, male 96.6
GTEX-17HHE-1726-SM-79OKT 50-59 years, male 95.9
GTEX-11VI4-1626-SM-5EQKO 40-49 years, female 95.6
GTEX-1S5ZA-1326-SM-EV7BB 20-29 years, male 94.9
GTEX-1C475-1426-SM-793CH 40-49 years, female 93.1
GTEX-1497J-1926-SM-5TDCC 60-69 years, male 92.3
GTEX-1QPFJ-2626-SM-DPRZU 30-39 years, female 92.1
GTEX-11LCK-1926-SM-5A5KE 30-39 years, male 88.8
GTEX-ZLFU-1526-SM-4WWBT 40-49 years, male 87.1
GTEX-1R9PM-1626-SM-DPRY9 20-29 years, male 87.1
GTEX-1R9JW-1926-SM-EVR4J 30-39 years, female 86.6
GTEX-131XE-0926-SM-5HL7J 50-59 years, male 84.0
GTEX-148VJ-2226-SM-5NQ9M 70-79 years, male 83.1
GTEX-1K9T9-2726-SM-D4P3E 50-59 years, female 82.0
GTEX-ZEX8-1826-SM-57WBH 50-59 years, male 81.0
GTEX-1QW4Y-1226-SM-EWRMY 30-39 years, male 81.0
GTEX-ZAB5-1526-SM-5HL9P 50-59 years, male 80.7
GTEX-UPK5-2026-SM-4JBIM 40-49 years, male 79.5
GTEX-Z9EW-0926-SM-5CVMM 40-49 years, male 79.1
GTEX-1JJE9-2226-SM-CXZJM 70-79 years, male 77.6
GTEX-X15G-1426-SM-4PQZK 50-59 years, female 77.5
GTEX-1IKOE-1926-SM-ARU7V 30-39 years, female 77.2
GTEX-1RAZA-1826-SM-DTXA2 20-29 years, male 74.1
GTEX-VJYA-0926-SM-4KL1N 60-69 years, male 73.9
GTEX-17MFQ-1026-SM-7KFSZ 20-29 years, male 72.6
GTEX-Y114-1426-SM-4TT6W 50-59 years, female 69.7
GTEX-1H1DE-1426-SM-9JGHV 20-29 years, male 69.4
GTEX-1GL5R-2026-SM-7MKHP 50-59 years, male 67.5
GTEX-1CB4F-1826-SM-7MGXI 60-69 years, male 65.0
GTEX-131XG-1726-SM-5LZUR 50-59 years, female 64.1
GTEX-11NSD-1726-SM-5N9C3 20-29 years, male 62.8
GTEX-1PIEJ-1526-SM-E6CP8 20-29 years, female 59.8
GTEX-11XUK-1426-SM-5EQMG 40-49 years, female 59.6
GTEX-1F75I-2526-SM-9WPOZ 40-49 years, male 58.8
GTEX-18QFQ-1626-SM-72D7H 30-39 years, male 56.1
GTEX-1JMQK-2426-SM-CXZJU 60-69 years, male 55.3
GTEX-183FY-1626-SM-793D8 20-29 years, male 51.6
GTEX-1OJC3-1626-SM-E9U65 20-29 years, male 50.9
GTEX-1PDJ9-1826-SM-E9U66 20-29 years, male 50.5
GTEX-1R9K4-2326-SM-E6CRB 60-69 years, male 49.7
GTEX-ZTPG-2626-SM-57WFX 20-29 years, female 48.6
GTEX-14C39-1826-SM-5ZZW4 40-49 years, male 43.8
GTEX-Y5V5-1826-SM-4VDS5 60-69 years, female 42.2
GTEX-Y111-2226-SM-4SOJB 50-59 years, male 41.0
GTEX-1192X-2526-SM-59868 50-59 years, male 40.7
GTEX-1LH75-1926-SM-DIPGD 50-59 years, female 38.4
GTEX-13NYB-1826-SM-5J1N3 40-49 years, male 37.7
GTEX-1QP28-1726-SM-E6CRK 50-59 years, female 35.3
GTEX-1RAZR-1826-SM-E6CRE 40-49 years, male 35.3
GTEX-11TUW-1926-SM-5BC58 60-69 years, male 34.4
GTEX-1RAZQ-2226-SM-DPRZR 30-39 years, male 34.2
GTEX-1BAJH-2526-SM-7IGOT 70-79 years, male 31.7
GTEX-ZF2S-1726-SM-57WFT 50-59 years, female 31.6
GTEX-1LBAC-1526-SM-CXZKU 20-29 years, male 26.4
GTEX-VUSG-1726-SM-4KKZL 50-59 years, male 24.3
GTEX-1H11D-2526-SM-9JGGU 40-49 years, male 22.4
GTEX-ZC5H-2326-SM-4WAYT 40-49 years, female 22.2
GTEX-1GMR3-2726-SM-7MKFB 40-49 years, male 18.2
GTEX-1EMGI-2826-SM-7IGMR 60-69 years, male 15.7
GTEX-1AX8Z-2526-SM-731E3 60-69 years, male 14.7
Show allShow less

SMALL INTESTINE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

279.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Small intestine
Scaled Tags Per Million: 279.9
FF:10024-101D6 15,40,85 years, mixed 279.9

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