We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
THRA
HPA
RESOURCES
  • TISSUE
  • BRAIN
  • SINGLE CELL
  • SUBCELLULAR
  • CANCER
  • BLOOD
  • CELL LINE
  • STRUCTURE & INTERACTION
ABOUT
  • INTRODUCTION
  • HISTORY
  • ORGANIZATION
  • PUBLICATIONS
  • ANTIBODY SUBMISSION
  • ANTIBODY AVAILABILITY
  • ACKNOWLEDGMENTS
  • CONTACT
NEWS
  • NEWS ARTICLES
  • PRESS ROOM
LEARN
  • DICTIONARY
  • PROTEIN CLASSES
  • PROTEIN EVIDENCE
  • METHODS
  • EDUCATIONAL VIDEOS
DATA
  • DOWNLOADABLE DATA
  • PUBLICATION DATA
  • RELEASE HISTORY
HELP
  • ANTIBODY VALIDATION
  • ASSAYS & ANNOTATION
  • DISCLAIMER
  • HELP & FAQ
  • PRIVACY STATEMENT
  • LICENCE & CITATION
Fields »
Search result

Field
Term
Gene name
Class
Subclass
Class
Keyword
Chromosome
External id
Tissue
Cell type
Expression
Antibody panel
Tissue
Main location
Patient ID
Annotation
Tissue
Category
Tau score
Cluster
Reliability
Brain region
Category
Tau score
Brain region
Category
Tau score
Brain region
Category
Tau score
Cluster
Reliability
Tissue
Cell type
Enrichment
Cell type
Category
Tau score
Cell type
Category
Tau score
Cell type
Category
Tau score
Cell lineage
Category
Tau score
Cluster
Cluster
Location
Searches
Location
Cell line
Class
Type
Phase
Reliability
Cancer
Prognosis
Cancer
Category
Cancer
Category
Tau score
Cluster
Variants
Interacting gene (ensg_id)
Type
Number of interactions
Pathway
Category
Score
Score
Score
Validation
Validation
Validation
Validation
Antibodies
Data type
Column


  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • SUBCELL

  • CANCER

  • BLOOD

  • CELL LINE

  • STRUCT & INT

  • THRA
TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Low
Neuronal cells: Not detected
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
GTEx:272.0 nTPM
FANTOM5:677.9 Scaled Tags Per Million
Pig:147.8 nTPM

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA009654Antibody CAB023349
Glial cells LowLow
Neuronal cells Not detectedNot detected




CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

272.0
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 272.0
Samples: 246

Max nTPM: 569.6
Min nTPM: 146.1
Std nTPM: 69.5
Median nTPM: 258.9
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 569.6
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 488.3
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 461.5
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 454.8
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 444.5
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 444.1
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 434.2
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 423.6
GTEX-UTHO-0011-R5A-SM-3GIJD 60-69 years, male 413.7
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 409.1
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 404.0
GTEX-P44H-0011-R5A-SM-2XCEX 40-49 years, male 395.4
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 390.6
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 387.5
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 387.3
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 385.7
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 385.7
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 384.6
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 380.2
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 377.3
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 377.2
GTEX-RU72-0011-R5A-SM-2TF6U 50-59 years, female 370.7
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 364.5
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 364.1
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 364.0
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 363.1
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 361.9
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 361.2
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 359.0
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 353.8
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 353.0
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 351.8
GTEX-TSE9-0011-R5A-SM-3DB7J 60-69 years, female 350.1
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 349.7
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 348.1
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 347.9
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 347.0
GTEX-18464-0011-R5b-SM-718A6 50-59 years, male 346.5
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 345.9
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 344.7
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 343.3
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 340.9
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 339.9
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 338.1
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 337.8
GTEX-12WSH-0011-R5b-SM-5P9F3 50-59 years, male 334.9
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 333.8
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 330.6
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 328.9
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 326.8
GTEX-N7MT-0011-R5a-SM-2I3G6 60-69 years, female 325.7
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 323.6
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 322.7
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 322.6
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 320.4
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 318.8
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 318.3
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 318.0
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 317.2
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 316.7
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 316.1
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 314.2
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 312.9
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 310.7
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 310.5
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 309.6
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 308.5
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 308.3
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 307.4
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 306.3
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 306.1
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 303.0
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 302.3
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 300.5
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 297.6
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 297.1
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 296.3
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 295.7
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 295.2
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 294.6
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 293.2
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 290.9
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 290.0
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 289.9
GTEX-OXRO-0011-R5A-SM-2I5EG 60-69 years, female 289.2
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 288.0
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 287.1
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 286.5
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 286.2
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 286.1
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 286.0
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 285.9
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 284.7
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 284.5
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 284.4
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 282.7
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 282.0
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 281.6
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 279.7
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 279.5
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 278.4
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 278.0
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 277.5
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 276.0
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 275.5
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 272.7
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 272.2
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 272.1
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 271.7
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 270.8
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 269.4
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 268.9
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 267.6
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 266.5
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 265.6
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 265.5
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 265.0
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 264.1
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 263.3
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 262.5
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 260.4
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 259.8
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 259.7
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 258.2
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 258.1
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 257.9
GTEX-RVPV-0011-R5A-SM-2TF69 60-69 years, male 257.2
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 256.4
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 255.5
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 254.9
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 253.8
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 253.2
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 252.3
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 251.8
GTEX-S7SE-0011-R5A-SM-2XCDA 50-59 years, male 251.3
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 251.3
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 251.0
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 249.8
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 249.0
GTEX-OXRN-0011-R5A-SM-2I5EF 50-59 years, male 248.2
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 248.0
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 247.7
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 246.8
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 246.7
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 246.2
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 245.8
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 245.4
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 245.2
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 244.7
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 243.5
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 243.5
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 243.4
GTEX-R55E-0011-R5A-SM-2TC5N 20-29 years, male 242.3
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 242.2
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 242.0
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 241.9
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 240.6
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 240.6
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 239.4
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 239.2
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 238.9
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 238.6
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 238.5
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 237.7
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 236.5
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 236.1
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 235.7
GTEX-P44G-0011-R5A-SM-2I3FA 30-39 years, male 235.5
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 235.4
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 234.8
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 234.5
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 234.2
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 234.1
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 233.7
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 233.3
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 232.8
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 232.4
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 232.1
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 231.8
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 231.6
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 230.6
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 229.1
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 228.2
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 228.1
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 227.9
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 227.9
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 226.7
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 223.6
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 223.3
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 223.0
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 222.7
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 222.2
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 220.6
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 220.4
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 219.9
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 216.8
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 213.5
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 213.3
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 213.0
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 210.4
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 209.4
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 208.3
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 208.1
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 207.5
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 206.8
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 204.7
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 203.6
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 203.2
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 202.2
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 199.9
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 199.4
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 198.2
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 198.1
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 197.8
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 197.7
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 197.7
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 197.4
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 196.3
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 196.1
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 195.5
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 192.3
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 191.1
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 190.4
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 190.4
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 189.7
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 189.4
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 186.8
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 184.6
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 183.2
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 182.8
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 180.0
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 178.4
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 178.3
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 177.6
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 174.5
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 170.3
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 165.3
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 160.6
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 155.3
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 153.8
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 152.4
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 150.6
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 149.8
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 149.0
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 147.1
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 146.1
Show allShow less

CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

677.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 677.9
FF:10164-103B2 76 years, female 677.9

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

147.8
Pig sample Sample description nTPM
Caudate
nTPM: 147.8
Samples: 4

Max nTPM: 169.5
Min nTPM: 127.9
Sample A Female 127.9
Sample B Female 169.5
Sample C Male 162.6
Sample D Male 131.3

Contact

  • NEWS ARTICLES
  • PRESS ROOM

The Project

  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS

The Human Protein Atlas

  • DOWNLOADABLE DATA
  • LICENCE & CITATION
  • HELP & FAQ
The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.


contact@proteinatlas.org