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TISSUE PRIMARY DATA SPINAL CORD Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Tissue proteome
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:140.3 nTPM
HPA Brain:201.9 nTPM
GTEx:140.3 nTPM
FANTOM5:192.9 Scaled Tags Per Million
Pig:108.2 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

201.9
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 201.9
2565 Male, age 75, midline 290.6
2816 Male, age 47, midline 196.0
1981 Female, age 72, midline 177.7
2048 Male, age 55, midline 176.8
2194 Female, age 79, both hemispheres 168.5
Cervical spinal cord, dorsal horn
nTPM: 186.7
2296 Male, age 66, both hemispheres 221.5
2721 Male, age 90, both hemispheres 192.4
1877 Male, age 55, unknown 189.4
2297 Male, age 75, both hemispheres 182.6
2069 Male, age 47, both hemispheres 168.9
2173 Female, age 72, unknown 165.2
Cervical spinal cord, ventral horn
nTPM: 182.4
2480 Male, age 75, both hemispheres 227.2
2809 Male, age 90, both hemispheres 205.0
2295 Male, age 66, both hemispheres 180.7
2098 Female, age 72, unknown 175.0
2068 Male, age 55, unknown 153.6
2820 Female, age 79, both hemispheres 153.1

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

140.3
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 140.3
Samples: 159

Max nTPM: 289.6
Min nTPM: 61.6
Std nTPM: 34.3
Median nTPM: 135.3
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 289.6
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 264.2
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 213.4
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 206.7
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 204.8
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 204.1
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 203.9
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 198.7
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 197.5
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 192.2
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 191.9
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 190.9
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 189.1
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 186.8
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 184.6
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 179.9
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 179.4
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 176.9
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 176.1
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 175.1
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 174.0
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 174.0
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 174.0
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 173.5
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 170.5
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 169.6
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 169.3
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 169.2
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 168.2
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 167.4
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 166.8
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 166.3
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 166.0
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 165.3
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 164.9
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 164.8
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 164.7
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 162.6
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 162.0
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 161.0
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 159.7
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 159.5
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 159.2
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 159.1
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 159.0
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 158.1
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 157.7
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 156.6
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 156.2
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 156.2
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 155.9
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 155.8
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 154.9
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 154.5
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 154.3
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 154.1
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 153.9
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 153.7
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 153.4
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 152.2
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 151.9
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 151.8
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 151.4
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 150.7
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 147.9
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 146.3
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 145.5
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 145.2
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 144.7
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 143.9
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 143.6
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 142.0
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 142.0
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 140.6
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 139.7
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 139.4
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 138.1
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 136.1
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 136.1
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 135.3
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 135.3
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 135.1
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 134.6
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 134.6
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 134.3
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 134.1
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 133.8
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 133.4
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 132.9
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 132.8
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 132.6
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 132.3
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 132.0
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 131.8
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 131.8
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 130.7
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 130.4
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 130.4
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 129.6
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 128.7
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 127.8
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 127.5
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 126.7
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 124.4
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 122.7
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 122.6
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 122.3
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 122.2
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 121.1
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 121.0
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 120.8
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 119.3
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 118.3
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 117.7
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 117.5
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 117.2
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 116.0
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 114.7
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 114.7
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 114.4
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 113.1
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 113.0
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 112.7
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 112.4
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 111.6
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 111.0
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 110.5
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 109.8
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 107.9
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 106.7
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 105.9
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 105.7
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 105.7
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 105.6
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 105.1
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 105.0
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 104.5
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 103.4
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 102.9
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 102.6
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 102.2
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 101.0
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 100.6
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 100.4
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 99.4
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 99.2
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 98.9
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 97.9
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 95.5
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 93.6
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 91.6
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 91.2
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 90.3
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 89.4
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 84.7
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 79.1
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 77.8
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 77.3
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 61.6
Show allShow less

SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

192.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 192.9
FF:10181-103D1 60 years, female 199.7
FF:10159-103A6 76 years, female 186.0

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

108.2
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 99.3
Samples: 4

Max nTPM: 105.3
Min nTPM: 83.5
Sample A Female 105.3
Sample B Female 104.4
Sample C Male 83.5
Sample D Male 103.8
Ventral spinal cord
nTPM: 108.2
Samples: 4

Max nTPM: 122.0
Min nTPM: 99.9
Sample A Female 99.9
Sample B Female 122.0
Sample C Male 103.0
Sample D Male 107.9

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