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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:389.1 nTPM
HPA Brain:205.4 nTPM
GTEx:389.1 nTPM
FANTOM5:151.0 Scaled Tags Per Million
Pig:73.9 nTPM
Mouse:252.3 nTPM
Allen mouse:7.1 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

205.4
Sample id Sample description nTPM
Amygdala
nTPM: 205.4
2814 Male, age 76, right hemisphere 265.1
2695 Female, age 67, right hemisphere 208.0
2517 Female, age 94, left hemisphere 187.5
1987 Female, age 91, left hemisphere 184.3
2514 Male, age 75, right hemisphere 181.9
Basal amygdala
nTPM: 156.0
1955 Male, age 76, both hemispheres 176.1
2110 Male, age 80, left hemisphere 171.3
2609 Male, age 75, right hemisphere 163.2
2243 Female, age 91, right hemisphere 151.3
2685 Female, age 94, left hemisphere 147.5
2827 Female, age 67, right hemisphere 126.9
Central amygdala
nTPM: 190.1
1905 Male, age 76, both hemispheres 248.2
2826 Female, age 94, left hemisphere 214.0
2239 Male, age 80, left hemisphere 166.1
2701 Female, age 91, right hemisphere 165.7
2515 Male, age 75, right hemisphere 156.8
Corticomedial amygdala
nTPM: 157.1
2829 Male, age 80, left hemisphere 165.0
2242 Female, age 91, right hemisphere 163.5
2429 Female, age 94, left hemisphere 163.2
2240 Male, age 76, both hemispheres 163.1
2428 Male, age 75, right hemisphere 155.8
2535 Female, age 67, right hemisphere 131.8
Lateral amygdala
nTPM: 158.4
1883 Male, age 76, both hemispheres 206.2
2534 Female, age 94, left hemisphere 183.8
2516 Male, age 75, right hemisphere 168.4
2830 Female, age 67, right hemisphere 137.1
2255 Female, age 91, right hemisphere 131.9
2256 Male, age 80, left hemisphere 122.7

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

389.1
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 389.1
Samples: 152

Max nTPM: 1408.4
Min nTPM: 125.7
Std nTPM: 163.9
Median nTPM: 349.0
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 1408.4
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 1126.8
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 931.3
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 924.8
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 771.7
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 677.5
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 671.3
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 667.6
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 660.6
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 650.0
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 617.4
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 578.6
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 572.1
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 564.5
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 540.7
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 540.1
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 537.6
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 536.3
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 520.3
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 519.1
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 514.8
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 512.7
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 511.6
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 498.3
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 485.1
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 480.6
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 478.6
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 475.4
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 469.1
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 468.3
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 464.3
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 463.1
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 453.9
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 451.5
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 443.2
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 441.9
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 441.3
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 436.5
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 435.5
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 431.3
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 426.9
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 424.7
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 420.5
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 415.7
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 414.2
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 414.0
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 413.4
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 404.5
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 403.8
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 403.3
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 402.1
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 401.9
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 399.7
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 396.6
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 396.4
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 390.7
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 384.9
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 383.9
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 382.4
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 381.0
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 380.1
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 377.4
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 376.0
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 375.2
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 371.7
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 371.4
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 367.6
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 366.3
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 364.7
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 358.4
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 358.3
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 354.9
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 354.5
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 353.4
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 351.8
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 349.4
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 348.7
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 348.6
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 348.1
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 347.3
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 346.8
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 342.5
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 342.4
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 339.1
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 338.5
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 338.1
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 336.5
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 335.4
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 334.1
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 330.6
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 329.8
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 328.7
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 328.5
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 327.7
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 326.4
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 326.4
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 325.7
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 324.8
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 323.2
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 315.6
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 312.8
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 311.7
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 311.1
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 311.0
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 309.4
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 307.6
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 307.2
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 306.8
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 306.7
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 306.4
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 304.2
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 303.1
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 302.6
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 300.7
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 297.4
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 293.6
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 292.8
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 292.6
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 291.4
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 290.4
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 286.9
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 286.8
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 284.5
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 283.0
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 282.1
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 281.5
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 281.4
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 279.8
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 279.6
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 279.0
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 278.3
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 277.5
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 268.6
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 268.0
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 265.1
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 265.1
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 258.7
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 248.3
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 241.5
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 237.4
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 233.0
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 232.8
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 227.5
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 221.7
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 218.9
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 217.5
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 189.8
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 189.3
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 188.3
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 165.8
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 146.2
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 125.7
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

151.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 151.0
FF:10151-102I7 76 years, female 151.0

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

73.9
Pig sample Sample description nTPM
Amygdala
nTPM: 73.9
Samples: 4

Max nTPM: 123.2
Min nTPM: 49.8
Sample A Female 123.2
Sample B Female 58.3
Sample C Male 64.4
Sample D Male 49.8

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

252.3
Mouse sample Sample description nTPM
Amygdala
nTPM: 252.3
Samples: 4

Max nTPM: 271.2
Min nTPM: 235.6
Sample A Male 251.0
Sample B Male 251.4
Sample C Female 271.2
Sample D Female 235.6

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

7.1
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 7.1
69817270 Antisense, RP_050510_03_A05, Mouse strain C57BL/6J (56 days, male) 7.2
76115740 Antisense, RP_060620_02_C08, Mouse strain C57BL/6J (56 days, male) 7.0

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