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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
PRIMARY MOUSE DATA
ANTIBODIES
AND
VALIDATION
Brain proteome
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:312.7 nTPM
HPA Brain:240.3 nTPM
GTEx:312.7 nTPM
FANTOM5:509.5 Scaled Tags Per Million

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

240.3
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 193.3
1981 Female, age 72, midline 293.2
2816 Male, age 47, midline 200.9
2048 Male, age 55, midline 168.3
2194 Female, age 79, both hemispheres 165.1
2565 Male, age 75, midline 139.2
Cervical spinal cord, dorsal horn
nTPM: 240.3
2296 Male, age 66, both hemispheres 488.5
2173 Female, age 72, unknown 351.5
2069 Male, age 47, both hemispheres 224.1
1877 Male, age 55, unknown 155.6
2721 Male, age 90, both hemispheres 114.2
2297 Male, age 75, both hemispheres 107.7
Cervical spinal cord, ventral horn
nTPM: 183.6
2098 Female, age 72, unknown 302.2
2068 Male, age 55, unknown 209.5
2809 Male, age 90, both hemispheres 162.3
2295 Male, age 66, both hemispheres 145.0
2480 Male, age 75, both hemispheres 141.9
2820 Female, age 79, both hemispheres 140.9

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

312.7
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 312.7
Samples: 159

Max nTPM: 661.7
Min nTPM: 44.5
Std nTPM: 126.7
Median nTPM: 313.1
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 661.7
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 632.8
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 599.2
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 572.8
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 570.2
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 568.3
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 536.0
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 534.3
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 518.4
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 517.2
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 517.1
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 516.8
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 506.0
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 504.3
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 503.8
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 493.7
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 490.9
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 485.1
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 484.7
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 474.4
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 470.3
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 457.3
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 446.9
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 438.6
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 436.2
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 431.8
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 426.6
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 422.9
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 417.6
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 410.6
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 410.6
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 408.4
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 406.4
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 405.3
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 403.7
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 402.2
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 400.9
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 400.7
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 394.8
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 393.8
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 393.2
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 392.0
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 385.8
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 382.2
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 380.8
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 380.2
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 379.6
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 379.1
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 377.4
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 375.4
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 373.6
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 373.3
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 371.4
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 368.8
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 368.5
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 365.2
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 364.4
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 363.9
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 360.5
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 355.0
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 351.0
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 350.2
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 346.9
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 344.9
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 340.8
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 340.6
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 338.9
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 338.0
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 337.6
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 333.9
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 333.0
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 331.0
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 330.8
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 328.7
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 326.1
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 320.9
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 318.4
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 318.2
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 316.2
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 313.1
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 309.7
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 308.9
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 308.5
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 301.4
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 301.4
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 299.2
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 294.6
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 294.3
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 288.1
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 284.6
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 284.4
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 283.5
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 283.2
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 280.7
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 274.4
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 269.1
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 267.6
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 266.1
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 264.2
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 263.0
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 255.5
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 254.6
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 253.5
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 248.8
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 247.4
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 245.0
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 244.9
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 242.8
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 241.3
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 238.3
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 229.6
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 229.0
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 228.4
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 225.4
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 225.1
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 225.0
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 224.9
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 223.3
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 218.4
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 218.3
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 213.9
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 213.6
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 213.3
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 211.5
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 207.9
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 207.4
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 205.5
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 199.4
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 197.0
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 196.4
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 196.2
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 189.4
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 185.0
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 183.4
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 181.0
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 176.6
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 176.4
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 172.6
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 171.0
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 165.3
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 163.3
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 152.9
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 151.9
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 143.4
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 142.6
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 139.9
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 138.1
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 137.2
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 131.3
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 122.3
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 117.0
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 106.6
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 101.0
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 95.3
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 88.9
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 76.3
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 73.4
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 56.0
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 44.5
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

509.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 509.5
FF:10181-103D1 60 years, female 549.7
FF:10159-103A6 76 years, female 469.3

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