We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
AIF1L
HPA
RESOURCES
  • TISSUE
  • BRAIN
  • SINGLE CELL
  • SUBCELLULAR
  • CANCER
  • BLOOD
  • CELL LINE
  • STRUCTURE & INTERACTION
ABOUT
  • INTRODUCTION
  • HISTORY
  • ORGANIZATION
  • PUBLICATIONS
  • ANTIBODY SUBMISSION
  • ANTIBODY AVAILABILITY
  • ACKNOWLEDGMENTS
  • CONTACT
NEWS
  • NEWS ARTICLES
  • PRESS ROOM
LEARN
  • DICTIONARY
  • PROTEIN CLASSES
  • PROTEIN EVIDENCE
  • METHODS
  • EDUCATIONAL VIDEOS
DATA
  • DOWNLOADABLE DATA
  • PUBLICATION DATA
  • RELEASE HISTORY
HELP
  • ANTIBODY VALIDATION
  • ASSAYS & ANNOTATION
  • DISCLAIMER
  • HELP & FAQ
  • PRIVACY STATEMENT
  • LICENCE & CITATION
Fields »
Search result

Field
Term
Gene name
Class
Subclass
Class
Keyword
Chromosome
External id
Tissue
Cell type
Expression
Antibody panel
Tissue
Main location
Patient ID
Annotation
Tissue
Category
Tau score
Cluster
Reliability
Brain region
Category
Tau score
Brain region
Category
Tau score
Brain region
Category
Tau score
Cluster
Reliability
Tissue
Cell type
Enrichment
Cell type
Category
Tau score
Cell type
Category
Tau score
Cell type
Category
Tau score
Cell lineage
Category
Tau score
Cluster
Cluster
Location
Searches
Location
Cell line
Class
Type
Phase
Reliability
Cancer
Prognosis
Cancer
Category
Cancer
Category
Tau score
Cluster
Variants
Interacting gene (ensg_id)
Type
Number of interactions
Pathway
Category
Score
Score
Score
Validation
Validation
Validation
Validation
Antibodies
Data type
Column


  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • SUBCELL

  • CANCER

  • BLOOD

  • CELL LINE

  • STRUCT & INT

  • AIF1L
BRAIN MEDULLA OBLONGATA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Medulla oblongata
MEDULLA OBLONGATA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
HPA Brain:240.2 nTPM
FANTOM5:241.7 Scaled Tags Per Million
Pig:214.0 nTPM
Allen mouse:0.2 Expression energy

MEDULLA OBLONGATA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

240.2
Sample id Sample description nTPM
Area postrema
nTPM: 225.7
2799 Male, age 61, both hemispheres 340.9
2306 Male, age 80, both hemispheres 191.7
2054 Male, age 76, both hemispheres 144.3
Dorsal medullary reticular nucleus
nTPM: 183.1
2373 Male, age 61, both hemispheres 198.0
2088 Male, age 76, both hemispheres 195.4
2040 Female, age 85, both hemispheres 156.1
Dorsal motor vagal complex
nTPM: 170.8
2797 Male, age 61, both hemispheres 344.4
2185 Male, age 76, both hemispheres 224.8
2643 Male, age 74, both hemispheres 160.6
2807 Female, age 85, both hemispheres 156.5
2133 Female, age 91, both hemispheres 131.9
2844 Male, age 55, unknown 123.9
2000 Male, age 74, unknown 118.7
2813 Female, age 72, unknown 105.3
Gigantocellular reticular nuclei, medullary
nTPM: 160.1
2314 Male, age 61, both hemispheres 204.9
2387 Female, age 91, both hemispheres 175.3
2022 Male, age 76, right hemisphere 164.6
2310 Male, age 80, both hemispheres 162.8
1876 Female, age 85, both hemispheres 156.5
2462 Male, age 74, both hemispheres 96.3
Gigantocellular reticular nuclei, pars
nTPM: 153.5
2706 Male, age 80, both hemispheres 180.1
2330 Male, age 80, both hemispheres 175.7
2336 Male, age 61, both hemispheres 162.1
2084 Female, age 85, both hemispheres 137.4
2168 Male, age 76, both hemispheres 112.4
Inferior olive
nTPM: 174.9
2379 Male, age 80, both hemispheres 202.9
2178 Male, age 61, both hemispheres 198.4
2628 Female, age 91, both hemispheres 197.8
2085 Female, age 85, both hemispheres 143.6
2563 Male, age 74, both hemispheres 131.8
Lateral medullary reticular nucleus
nTPM: 167.3
2852 Male, age 80, both hemispheres 201.1
2374 Male, age 61, both hemispheres 194.0
2044 Male, age 76, both hemispheres 176.1
2190 Female, age 85, both hemispheres 155.5
2804 Female, age 91, both hemispheres 151.3
2305 Male, age 74, both hemispheres 126.0
Medial olivary nucleus
nTPM: 199.5
1962 Male, age 76, both hemispheres 247.0
1943 Male, age 61, both hemispheres 230.3
2851 Male, age 80, both hemispheres 179.8
2138 Female, age 91, both hemispheres 141.0
Medial vestibular nucleus
nTPM: 155.3
2624 Male, age 61, both hemispheres 200.5
2803 Female, age 91, both hemispheres 195.8
2093 Male, age 80, both hemispheres 191.8
2801 Male, age 74, both hemispheres 157.4
2743 Female, age 85, both hemispheres 95.2
2134 Male, age 76, both hemispheres 91.3
Motor hypoglossal nucleus
nTPM: 155.9
2182 Male, age 80, both hemispheres 203.9
2132 Female, age 85, both hemispheres 178.3
2125 Female, age 91, both hemispheres 178.1
2461 Male, age 61, both hemispheres 130.4
2277 Male, age 76, both hemispheres 88.9
Nucleus ambiguus
nTPM: 182.4
2071 Male, age 76, both hemispheres 218.4
2096 Female, age 85, both hemispheres 146.4
Nucleus cuneatus
nTPM: 232.5
2805 Female, age 91, both hemispheres 269.9
2808 Female, age 85, both hemispheres 254.4
2380 Male, age 80, both hemispheres 251.7
2376 Male, age 61, both hemispheres 240.0
2381 Male, age 80, both hemispheres 234.5
2562 Male, age 61, both hemispheres 233.0
2100 Male, age 76, both hemispheres 229.4
2564 Male, age 74, both hemispheres 219.0
2131 Male, age 76, both hemispheres 160.8
Nucleus gracilis
nTPM: 222.6
2382 Male, age 80, both hemispheres 271.1
2299 Female, age 85, both hemispheres 224.0
2627 Male, age 74, both hemispheres 172.5
Nucleus raphe obscurus
nTPM: 217.8
2142 Male, age 76, midline 235.0
2800 Male, age 61, midline 209.9
2845 Female, age 85, midline 208.6
Nucleus raphe pallidus
nTPM: 240.2
1924 Male, age 61, midline 316.6
2145 Male, age 76, midline 232.8
2183 Male, age 80, midline 171.1
Nucleus tractus solitarii
nTPM: 90.3
2656 Male, age 76, both hemispheres 111.3
2307 Male, age 80, both hemispheres 98.7
2191 Female, age 85, both hemispheres 88.3
2144 Female, age 91, right hemisphere 63.1
Parvicellular reticular nuclei
nTPM: 157.1
2095 Male, age 76, both hemispheres 177.0
2119 Male, age 80, both hemispheres 162.5
2558 Male, age 74, both hemispheres 131.7
Parvicellular reticular nuclei, medullary
nTPM: 146.4
2181 Male, age 80, left hemisphere 152.4
2189 Female, age 91, both hemispheres 151.1
2091 Female, age 85, both hemispheres 135.6
Peritrigeminal nucleus
nTPM: 156.6
2136 Male, age 76, both hemispheres 180.0
2179 Male, age 61, both hemispheres 148.2
2067 Female, age 85, both hemispheres 141.6
Prepositus hypoglossal nucleus
nTPM: 145.7
2855 Female, age 85, right hemisphere 169.6
2086 Male, age 80, both hemispheres 121.7
Spinal trigeminal nucleus, caudal
nTPM: 172.9
2312 Male, age 61, both hemispheres 197.0
2308 Male, age 80, both hemispheres 191.1
2447 Male, age 76, both hemispheres 182.2
2390 Female, age 91, both hemispheres 149.4
2642 Male, age 74, both hemispheres 144.6
Spinal trigeminal nucleus, interpolar
nTPM: 152.9
2033 Male, age 80, both hemispheres 180.5
2386 Female, age 85, both hemispheres 154.1
2389 Female, age 91, both hemispheres 153.2
2625 Male, age 61, both hemispheres 150.9
2066 Male, age 76, right hemisphere 126.1
Spinal vestibular nucleus
nTPM: 204.3
2748 Male, age 76, both hemispheres 241.8
2384 Male, age 74, both hemispheres 237.2
2796 Male, age 61, both hemispheres 206.4
2806 Female, age 85, both hemispheres 191.0
2780 Male, age 80, both hemispheres 190.3
2186 Female, age 91, both hemispheres 159.2
Superior vestibular nucleus
nTPM: 126.1
2015 Male, age 80, both hemispheres 162.8
2061 Male, age 76, both hemispheres 122.5
2383 Male, age 74, both hemispheres 93.0
Ventral medullary reticular nucleus
nTPM: 211.4
2060 Male, age 76, both hemispheres 224.4
2372 Male, age 61, both hemispheres 198.4
Ventrolateral medulla, A1-C1 cell groups
nTPM: 159.8
2118 Male, age 80, both hemispheres 202.6
1986 Male, age 76, both hemispheres 163.6
2180 Male, age 61, both hemispheres 163.5
2302 Female, age 91, both hemispheres 141.7
2741 Female, age 85, both hemispheres 127.5

MEDULLA OBLONGATA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

241.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Medulla oblongata
Scaled Tags Per Million: 241.7
FF:10038-101F2 18-64 years, mixed 284.6
FF:10174-103C3 60 years, female 275.1
FF:10155-103A2 76 years, female 165.3

MEDULLA OBLONGATA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

214.0
Pig sample Sample description nTPM
Medulla oblongata
nTPM: 214.0
Samples: 4

Max nTPM: 251.9
Min nTPM: 167.0
Sample A Female 207.5
Sample B Female 167.0
Sample C Male 251.9
Sample D Male 229.6

MEDULLA OBLONGATA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

0.2
Allen experiment id Experiment description Expression energy
Medulla oblongata
Expression energy: 0.2
67815543 Antisense, RP_040920_01_H02, Mouse strain C57BL/6J (56 days, male) 0.2

Contact

  • NEWS ARTICLES
  • PRESS ROOM

The Project

  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS

The Human Protein Atlas

  • DOWNLOADABLE DATA
  • LICENCE & CITATION
  • HELP & FAQ
The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.


contact@proteinatlas.org