MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:196.3 nTPM
HPA Brain:229.3 nTPM
GTEx:196.3 nTPM
FANTOM5:282.6 Scaled Tags Per Million
Pig:197.7 nTPM
Mouse:7.5 nTPM
Allen mouse:0.1 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 229.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 166.6
1830 Male, age 51, unknown 204.2
2666 Male, age 74, left hemisphere 201.2
1833 Male, age 53, unknown 189.9
2586 Male, age 75, left hemisphere 189.2
2019 Male, age 18, unknown 183.6
1870 Female, age 42, unknown 179.2
2411 Female, age 72, unknown 164.9
2828 Female, age 72, unknown 148.2
1827 Male, age 72, unknown 105.9
2219 Male, age 76, both hemispheres 99.3
Dorsal raphe nucleus
nTPM: 112.6
2750 Male, age 76, both hemispheres 201.8
1828 Male, age 53, unknown 115.9
2016 Female, age 72, unknown 109.0
2047 Male, age 72, unknown 79.5
2298 Female, age 72, unknown 56.9
Inferior colliculus
nTPM: 109.1
1890 Male, age 53, unknown 124.1
1848 Female, age 42, unknown 108.6
2849 Male, age 72, unknown 106.1
2097 Female, age 72, unknown 97.7
Median raphe nucleus
nTPM: 91.8
2220 Male, age 76, midline 91.8
Periaquaductal grey, anterior
nTPM: 90.4
2502 Female, age 75, unknown 107.4
1947 Male, age 18, unknown 93.2
1795 Male, age 51, unknown 70.5
Periaquaductal grey, dorsal
nTPM: 71.3
2464 Female, age 72, unknown 110.9
1831 Male, age 72, unknown 86.9
1840 Male, age 53, unknown 44.9
2850 Male, age 76, both hemispheres 42.5
Periaquaductal grey, lateral
nTPM: 65.8
2053 Male, age 18, unknown 90.1
2272 Male, age 74, both hemispheres 65.3
2140 Male, age 76, both hemispheres 41.9
Pretectal area
nTPM: 92.0
1815 Male, age 53, unknown 144.6
1817 Female, age 42, unknown 127.3
2316 Male, age 76, right hemisphere 116.6
2007 Male, age 72, unknown 110.4
2407 Male, age 75, both hemispheres 108.9
2825 Male, age 18, unknown 96.4
1944 Female, age 72, unknown 69.7
1816 Male, age 51, unknown 63.9
2667 Female, age 75, unknown 62.6
2224 Female, age 72, unknown 60.1
2273 Male, age 74, both hemispheres 51.2
Red nucleus
nTPM: 229.3
2823 Male, age 76, right hemisphere 271.3
1865 Male, age 51, unknown 262.7
1821 Female, age 72, unknown 261.4
1904 Male, age 53, unknown 256.9
2588 Male, age 74, left hemisphere 250.7
2769 Male, age 72, unknown 234.0
2227 Male, age 72, unknown 225.8
2503 Female, age 72, unknown 223.2
1954 Female, age 42, unknown 215.9
2785 Male, age 18, unknown 195.3
2725 Female, age 75, unknown 181.3
2584 Male, age 75, left hemisphere 172.6
Substantia nigra
nTPM: 122.1
2665 Male, age 74, both hemispheres 144.7
1851 Male, age 51, unknown 139.7
2590 Female, age 75, unknown 136.3
2583 Male, age 75, right hemisphere 133.2
1889 Female, age 72, unknown 131.1
2409 Female, age 72, unknown 129.6
2699 Male, age 18, unknown 115.3
2241 Male, age 72, unknown 99.8
1916 Female, age 42, unknown 96.3
1941 Male, age 53, unknown 95.2
Superior colliculus
nTPM: 127.6
1995 Male, age 72, unknown 174.1
1913 Female, age 42, unknown 172.7
2668 Female, age 75, unknown 155.6
1895 Male, age 76, right hemisphere 149.2
2587 Male, age 74, left hemisphere 148.4
1839 Male, age 51, unknown 136.2
2664 Male, age 75, both hemispheres 94.1
1796 Male, age 53, unknown 90.0
2261 Male, age 18, unknown 78.8
2087 Female, age 72, unknown 77.4
Ventral tegmental area
nTPM: 119.7
2223 Female, age 72, unknown 155.1
2410 Female, age 72, unknown 148.7
1942 Male, age 51, unknown 106.8
1915 Female, age 42, unknown 106.6
2021 Male, age 53, unknown 103.7
2218 Male, age 76, both hemispheres 97.0

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 196.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 196.3
Samples: 139

Max nTPM: 454.0
Min nTPM: 56.9
Std nTPM: 91.3
Median nTPM: 175.5
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 454.0
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 447.4
GTEX-OHPN-0011-R2A-SM-2I5FB 60-69 years, female 438.7
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 398.0
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 395.9
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 386.6
GTEX-1GN2E-0011-R2a-SM-9WG7D 60-69 years, male 386.3
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 382.3
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 379.7
GTEX-1I1CD-0011-R2a-SM-CM2T3 60-69 years, female 375.3
GTEX-YJ89-0011-R2b-SM-4RGLT 60-69 years, male 374.8
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 282.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 282.6
FF:10158-103A5 76 years, female 282.6

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 197.7
Pig sample Sample description nTPM
Substantia nigra
nTPM: 178.8
Samples: 4

Max nTPM: 262.2
Min nTPM: 130.7
Sample A Female 173.8
Sample B Female 130.7
Sample C Male 148.3
Sample D Male 262.2
Midbrain
nTPM: 197.7
Samples: 4

Max nTPM: 404.7
Min nTPM: 100.5
Sample A Female 404.7
Sample B Female 179.5
Sample C Male 106.1
Sample D Male 100.5
Periaqueductal gray
nTPM: 116.1
Samples: 3

Max nTPM: 138.6
Min nTPM: 96.8
Sample B Female 138.6
Sample C Male 96.8
Sample D Male 112.9
Superior colliculi
nTPM: 150.3
Samples: 4

Max nTPM: 176.7
Min nTPM: 82.9
Sample A Female 174.7
Sample B Female 82.9
Sample C Male 166.7
Sample D Male 176.7

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 7.5
Mouse sample Sample description nTPM
Midbrain
nTPM: 7.6
Samples: 4

Max nTPM: 8.8
Min nTPM: 6.7
Sample A Male 8.8
Sample B Male 7.8
Sample C Female 6.9
Sample D Female 6.7

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.1
67815543 Antisense, RP_040920_01_H02, Mouse strain C57BL/6J (56 days, male) 0.1

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